Whole Genome Sequencing and Comparative Genomic Analysis of Chlamydia gallinacea Field Strains Isolated from Poultry in Poland

被引:0
|
作者
Zareba-Marchewka, Kinga [1 ]
Bomba, Arkadiusz [2 ]
Scharf, Sabine [3 ]
Niemczuk, Krzysztof [1 ,4 ]
Schnee, Christiane [3 ]
Szymanska-Czerwinska, Monika [1 ,4 ]
机构
[1] Natl Vet Res Inst, Dept Cattle & Sheep Dis, Al Partyzantow 57, PL-24100 Pulawy, Poland
[2] Natl Vet Res Inst, Dept Omics Anal, Al Partyzantow 57, PL-24100 Pulawy, Poland
[3] Friedrich Loeffler Inst, Inst Mol Pathogenesis, Fed Res Inst Anim Hlth, Naumburger Str 96, D-07743 Jena, Germany
[4] Natl Vet Res Inst, Lab Serol Diag, Al Partyzantow 57, PL-24100 Pulawy, Poland
来源
PATHOGENS | 2023年 / 12卷 / 07期
关键词
Chlamydia gallinacea; chlamydiae; poultry; comparative genome analysis; FAMILY CHLAMYDIACEAE; C.-GALLINACEA; IQ-TREE; MEMBRANE; PSITTACI; PROTEIN; TRANSMISSION; ALGORITHM; ALIGNMENT; PROPOSAL;
D O I
10.3390/pathogens12070891
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Chlamydia gallinacea is an intracellular bacterium belonging to the Chlamydiaceae family. Poultry is considered to be the major reservoir of this agent, which has worldwide distribution and a particularly consistent worldwide occurrence in chicken flocks. The bacterium has been linked to respiratory disease in humans but without definitive confirmation; nevertheless, while it has not been proved to be the cause of human respiratory disease, a recent report from Italy verified its bird-to-human transmission. This aspect being significant for public health, more research is needed to gain insight into the infection biology of C. gallinacea. In this study, the genomes of eleven novel C. gallinacea field strains from different regions of Poland were analyzed comparatively. It was confirmed that C. gallinacea strains are closely related, with at least 99.46% sequence identity. They possess a conservative genome structure involving the plasticity zone with a complete cytotoxin, the type three secretion system, inclusion membrane proteins, polymorphic membrane proteins, hctA and hctB histone-like proteins, and the chlamydial protease-like activating factor exoenzyme, as well as plasmids. Genetic diversity seems to be restricted. However, some genetic loci, such as ompA and multi-locus sequence typing target genes, are diverse enough to enable high-resolution genotyping and epidemiological tracing.
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