Impedimetric biofilm characterization with microelectrode arrays using equivalent electrical circuit features and ensemble classifiers

被引:1
|
作者
Van Haeverbeke, Maxime [1 ]
Cums, Charlotte [2 ,3 ]
Vackier, Thijs [2 ]
Braeken, Dries [3 ]
Stock, Michiel [1 ]
Steenackers, Hans [2 ]
De Baets, Bernard [1 ]
机构
[1] Univ Ghent, Dept Data Anal & Math Modelling, KERMIT Res Unit, Coupure Links 653, B-9000 Ghent, Belgium
[2] Katholieke Univ Leuven, Ctr Microbial & Plant Genet CMPG, Dept Microbial & Mol Syst, Kasteelpk Arenberg 20, B-3001 Leuven, Belgium
[3] IMEC, Life Sci Technol Dept, Remisebosweg 1, B-3001 Leuven, Belgium
关键词
Electrochemical impedance spectroscopy; Microelectrode arrays; Bacterial biofilms; Feature engineering; Random forests; IMPEDANCE SPECTROSCOPY; ESCHERICHIA-COLI; BACTERIAL BIOFILMS; INFECTIONS; ELECTRODE; CAPACITANCE; IDENTIFICATION; RESISTANCE;
D O I
10.1016/j.chemolab.2023.105048
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Electrochemical impedance spectroscopy has proven to be a promising technique for detecting bacterial biofilms. However, its potential for microbial identification has yet to be thoroughly investigated. In this work, we explore the classification of bacterial biofilms at both the strain and species level using commercial microelectrode arrays. Here, we built predictive decision tree ensemble classifiers based on impedance spectroscopy measurements and the extracted equivalent electrical circuit model features. We evaluated this experimental and modelling strategy for classifying a selection of bacterial (sub)species' biofilms relevant to food processing and healthcare. The inclusion of equivalent electrical circuit features in the models consistently improves the classification performance by 2% to 11%. At the same time, a further robust improvement of 3% to 9% is achieved through the use of microelectrode arrays as opposed to single electrodes.
引用
收藏
页数:12
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