Multi-omics data integration methods and their applications in psychiatric disorders

被引:31
|
作者
Sathyanarayanan, Anita [1 ]
Mueller, Tamara T. [2 ]
Moni, Mohammad Ali [3 ]
Schueler, Katja [4 ,5 ]
Baune, Bernhard T. [6 ,7 ,8 ]
Lio, Pietro [9 ]
Mehta, Divya [1 ]
机构
[1] Queensland Univ Technol, Fac Hlth, Ctr Genom & Personalised Hlth, Sch Biomed Sci, Kelvin Grove, Qld 4059, Australia
[2] Tech Univ Munich, Inst Artificial Intelligence & Informat Med, D-80333 Munich, Germany
[3] Univ Queensland, Fac Hlth & Behav Sci, Sch Hlth & Rehabil Sci, Artificial Intelligence & Digital Hlth Data Sci, St Lucia, Qld 4072, Australia
[4] Hosp Zum Heiligen Geist, Clin Psychosomat, Frankfurt, Germany
[5] Frankfurt Psychoanalyt Inst, Frankfurt, Germany
[6] Univ Munster, Dept Psychiat & Psychotherapy, Munster, Germany
[7] Univ Melbourne, Melbourne Med Sch, Dept Psychiat, Melbourne, Vic, Australia
[8] Univ Melbourne, Florey Inst Neurosci & Mental Hlth, Melbourne, Vic, Australia
[9] Univ Cambridge, Dept Comp Sci & Technol, Cambridge, England
关键词
Multi-omics; Genomics; Transcriptomics; Statistics; Machine learning; Psychiatry; Bench to bedside; GENOME-WIDE ASSOCIATION; SUPPORT-SYSTEM; MENTAL-HEALTH; TRANSCRIPTOME; BRAIN; SCHIZOPHRENIA; METHYLATION; DEPRESSION; ENRICHMENT; CHALLENGES;
D O I
10.1016/j.euroneuro.2023.01.001
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
combine the information rich multi-omics data to discover biologically meaningful biomarkers for diagnosis, treatment, and prognosis. However, clinical translation of the research is still challenging. In this review, we summarise conventional and state-of-the-art statistical and ma-chine learning approaches for discovery of biomarker, diagnosis, as well as outcome and treat-ment response prediction through integrating multi-omics and clinical data. In addition, we describe the role of biological model systems and in silico multi-omics model designs in clinical translation of psychiatric research from bench to bedside. Finally, we discuss the current chal-lenges and explore the application of multi-omics integration in future psychiatric research. The review provides a structured overview and latest updates in the field of multi-omics in psychiatry. (c) 2023 Elsevier B.V. and ECNP. All rights reserved.
引用
收藏
页码:26 / 46
页数:21
相关论文
共 50 条
  • [1] Methods for the integration of multi-omics data: mathematical aspects
    Matteo Bersanelli
    Ettore Mosca
    Daniel Remondini
    Enrico Giampieri
    Claudia Sala
    Gastone Castellani
    Luciano Milanesi
    BMC Bioinformatics, 17
  • [2] Methods for the integration of multi-omics data: mathematical aspects
    Bersanelli, Matteo
    Mosca, Ettore
    Remondini, Daniel
    Giampieri, Enrico
    Sala, Claudia
    Castellani, Gastone
    Milanesi, Luciano
    BMC BIOINFORMATICS, 2016, 17
  • [3] ‘Multi-omics’ data integration: applications in probiotics studies
    Iliya Dauda Kwoji
    Olayinka Ayobami Aiyegoro
    Moses Okpeku
    Matthew Adekunle Adeleke
    npj Science of Food, 7
  • [4] 'Multi-omics' data integration: applications in probiotics studies
    Kwoji, Iliya Dauda
    Aiyegoro, Olayinka Ayobami
    Okpeku, Moses
    Adeleke, Matthew Adekunle
    NPJ SCIENCE OF FOOD, 2023, 7 (01)
  • [5] Survey on Multi-omics, and Multi-omics Data Analysis, Integration and Application
    Shahrajabian, Mohamad Hesam
    Sun, Wenli
    CURRENT PHARMACEUTICAL ANALYSIS, 2023, 19 (04) : 267 - 281
  • [6] Data integration and predictive modeling methods for multi-omics datasets
    Kim, Minseung
    Tagkopoulos, Ilias
    MOLECULAR OMICS, 2018, 14 (01) : 8 - 25
  • [7] Unsupervised Multi-Omics Data Integration Methods: A Comprehensive Review
    Vahabi, Nasim
    Michailidis, George
    FRONTIERS IN GENETICS, 2022, 13
  • [8] Integration of multi-omics data for the diagnosis of Rett syndrome spectrum disorders
    Xiol, Clara
    Fernandez, Guerau
    Pascual-Alonso, Ainhoa
    Smirnov, Dmitrii
    Kopajtich, Robert
    Prokisch, Holger
    Armstrong, Judith
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 507 - 508
  • [9] Spatial multi-omics: deciphering technological landscape of integration of multi-omics and its applications
    Liu, Xiaojie
    Peng, Ting
    Xu, Miaochun
    Lin, Shitong
    Hu, Bai
    Chu, Tian
    Liu, Binghan
    Xu, Yashi
    Ding, Wencheng
    Li, Li
    Cao, Canhui
    Wu, Peng
    JOURNAL OF HEMATOLOGY & ONCOLOGY, 2024, 17 (01)
  • [10] Evaluation and comparison of multi-omics data integration methods for cancer subtyping
    Duan, Ran
    Gao, Lin
    Gao, Yong
    Hu, Yuxuan
    Xu, Han
    Huang, Mingfeng
    Song, Kuo
    Wang, Hongda
    Dong, Yongqiang
    Jiang, Chaoqun
    Zhang, Chenxing
    Jia, Songwei
    PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (08)