Use of whole-genome variants and their frequency data to estimate haplotype structure in the Thoroughbred genome

被引:0
|
作者
Tozaki, Teruaki [1 ,2 ]
Ohnuma, Aoi [1 ]
Kikuchi, Mio [1 ]
Ishige, Taichiro [1 ]
Kakoi, Hironaga [1 ]
Hirora, Kei-ichi [1 ]
Nagata, Shun-ichi [1 ]
机构
[1] Genet Anal Dept, Lab Racing Chem, Utsunomiya, Tochigi, Japan
[2] Genet Anal Dept, Lab Racing Chem, 1731-2 Tsurutamachi, Utsunomiya, Tochigi 3200851, Japan
关键词
D O I
10.1111/age.13338
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
[No abstract available]
引用
收藏
页码:662 / 663
页数:2
相关论文
共 50 条
  • [1] GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data
    Markowski, Julia
    Kempfer, Rieke
    Kukalev, Alexander
    Irastorza-Azcarate, Ibai
    Loof, Gesa
    Kehr, Birte
    Pombo, Ana
    Rahmann, Sven
    Schwarz, Roland F.
    [J]. BIOINFORMATICS, 2021, 37 (19) : 3128 - 3135
  • [2] HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome
    Kim, Jong Hyun
    Kim, Woo-Cheol
    Waterman, Michael S.
    Park, Sanghyun
    Li, Lei M.
    [J]. BIOINFORMATICS, 2009, 25 (18) : 2430 - 2431
  • [3] Haplotype and population structure inference using neural networks in whole-genome sequencing data
    Meisner, Jonas
    Albrechtsen, Anders
    [J]. GENOME RESEARCH, 2022, 32 (08) : 1542 - 1552
  • [4] Exact algorithms for haplotype assembly from whole-genome sequence data
    Chen, Zhi-Zhong
    Deng, Fei
    Wang, Lusheng
    [J]. BIOINFORMATICS, 2013, 29 (16) : 1938 - 1945
  • [5] Optimal algorithms for haplotype assembly from whole-genome sequence data
    He, Dan
    Choi, Arthur
    Pipatsrisawat, Knot
    Darwiche, Adnan
    Eskin, Eleazar
    [J]. BIOINFORMATICS, 2010, 26 (12) : i183 - i190
  • [6] An MCMC algorithm for haplotype assembly from whole-genome sequence data
    Bansal, Vikas
    Halpern, Aaron L.
    Axelrod, Nelson
    Bafna, Vineet
    [J]. GENOME RESEARCH, 2008, 18 (08) : 1336 - 1346
  • [7] Use of deep whole-genome sequencing data to identify structure risk variants in breast cancer susceptibility genes
    Guo, Xingyi
    Shi, Jiajun
    Cai, Qiuyin
    Shu, Xiao-Ou
    He, Jing
    Wen, Wanqing
    Allen, Jamie
    Pharoah, Paul
    Dunning, Alison
    Hunter, David J.
    Kraft, Peter
    Easton, Douglas F.
    Zheng, Wei
    Long, Jirong
    [J]. HUMAN MOLECULAR GENETICS, 2018, 27 (05) : 853 - 859
  • [8] ENCODE whole-genome data in the UCSC Genome Browser
    Rosenbloom, Kate R.
    Dreszer, Timothy R.
    Pheasant, Michael
    Barber, Galt P.
    Meyer, Laurence R.
    Pohl, Andy
    Raney, Brian J.
    Wang, Ting
    Hinrichs, Angie S.
    Zweig, Ann S.
    Fujita, Pauline A.
    Learned, Katrina
    Rhead, Brooke
    Smith, Kayla E.
    Kuhn, Robert M.
    Karolchik, Donna
    Haussler, David
    Kent, W. James
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D620 - D625
  • [9] Methods for Collapsing Multiple Rare Variants in Whole-Genome Sequence Data
    Sung, Yun Ju
    Korthauer, Keegan D.
    Swartz, Michael D.
    Engelman, Corinne D.
    [J]. GENETIC EPIDEMIOLOGY, 2014, 38 : S13 - S20
  • [10] Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    Browning, Sharon R.
    Browning, Brian L.
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 81 (05) : 1084 - 1097