BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

被引:1
|
作者
Nentidis, Anastasios [1 ,2 ]
Krithara, Anastasia [1 ]
Paliouras, Georgios [1 ]
Farre-Maduell, Eulalia [3 ]
Lima-Lopez, Salvador [3 ]
Krallinger, Martin [3 ]
机构
[1] Natl Ctr Sci Res Demokritos, Athens, Greece
[2] Aristotle Univ Thessaloniki, Thessaloniki, Greece
[3] Barcelona Supercomp Ctr, Barcelona, Spain
关键词
Biomedical information; Semantic indexing; Question answering;
D O I
10.1007/978-3-031-28241-6_66
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
The large-scale biomedical semantic indexing and questionanswering challenge (BioASQ) aims at the continuous advancement of methods and tools to meet the need of biomedical researchers and practitioners for efficient and precise access to the ever-increasing resources of their domain. With this purpose, during the last ten years a series of annual challenges have been organized with specific shared tasks on largescale biomedical semantic indexing and question answering. Benchmark datasets have been concomitantly provided in alignment with the real needs of biomedical experts. BioASQ provides a unique common testbed where different teams around the world can investigate and compare new approaches for identifying and accessing biomedical knowledge. The eleventh version of the BioASQ Challenge will be held as an evaluation Lab within CLEF2023. In this version, three shared tasks will be presented: (i) the automated retrieval of relevant material for biomedical questions, and the generation of comprehensible answers. (ii) the synergistic retrieval of relevant material and generation of answers for open biomedical questions about developing topics, in collaboration with the experts posing the questions. (iii) the automated indexing of unlabelled clinical procedures-specific medical documents, primarily clinical case reports written in Spanish, with biomedical concepts and the extraction of human-interpretable evidence. As BioASQ rewards the methods that outperform the state of the art in these shared tasks, it pushes the research frontier towards approaches that accelerate access to biomedical knowledge.
引用
收藏
页码:577 / 584
页数:8
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共 13 条
  • [1] BioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge
    Nentidis, Anastasios
    Krithara, Anastasia
    Paliouras, Georgios
    Gasco, Luis
    Krallinger, Martin
    [J]. ADVANCES IN INFORMATION RETRIEVAL, PT II, 2022, 13186 : 429 - 435
  • [2] BioASQ at CLEF2024: The Twelfth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge
    Nentidis, Anastasios
    Krithara, Anastasia
    Paliouras, Georgios
    Krallinger, Martin
    Gasco Sanchez, Luis
    Lima, Salvador
    Farre, Eulalia
    Loukachevitch, Natalia
    Davydova, Vera
    Tutubalina, Elena
    [J]. ADVANCES IN INFORMATION RETRIEVAL, ECIR 2024, PT V, 2024, 14612 : 490 - 497
  • [3] BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
    Balikas, Georgios
    Krithara, Anastasia
    Partalas, Ioannis
    Paliouras, George
    [J]. MULTIMODAL RETRIEVAL IN THE MEDICAL DOMAIN, MRMD 2015, 2015, 9059 : 26 - 39
  • [4] Overview of BioASQ 2022: The Tenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering
    Nentidis, Anastasios
    Katsimpras, Georgios
    Vandorou, Eirini
    Krithara, Anastasia
    Miranda-Escalada, Antonio
    Gasco, Luis
    Krallinger, Martin
    Paliouras, Georgios
    [J]. EXPERIMENTAL IR MEETS MULTILINGUALITY, MULTIMODALITY, AND INTERACTION (CLEF 2022), 2022, 13390 : 337 - 361
  • [5] An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition
    Tsatsaronis, George
    Balikas, Georgios
    Malakasiotis, Prodromos
    Partalas, Ioannis
    Zschunke, Matthias
    Alvers, Michael R.
    Weissenborn, Dirk
    Krithara, Anastasia
    Petridis, Sergios
    Polychronopoulos, Dimitris
    Almirantis, Yannis
    Pavlopoulos, John
    Baskiotis, Nicolas
    Gallinari, Patrick
    Artieres, Thierry
    Ngomo, Axel-Cyrille Ngonga
    Heino, Norman
    Gaussier, Eric
    Barrio-Alvers, Liliana
    Schroeder, Michael
    Androutsopoulos, Ion
    Paliouras, Georgios
    [J]. BMC BIOINFORMATICS, 2015, 16
  • [6] An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition
    George Tsatsaronis
    Georgios Balikas
    Prodromos Malakasiotis
    Ioannis Partalas
    Matthias Zschunke
    Michael R Alvers
    Dirk Weissenborn
    Anastasia Krithara
    Sergios Petridis
    Dimitris Polychronopoulos
    Yannis Almirantis
    John Pavlopoulos
    Nicolas Baskiotis
    Patrick Gallinari
    Thierry Artiéres
    Axel-Cyrille Ngonga Ngomo
    Norman Heino
    Eric Gaussier
    Liliana Barrio-Alvers
    Michael Schroeder
    Ion Androutsopoulos
    Georgios Paliouras
    [J]. BMC Bioinformatics, 16
  • [7] Semantic Annotation in the Biomedical Domain: Large-scale Classification and BioASQ
    Gaussier, Eric
    [J]. COMPANION PROCEEDINGS OF THE WORLD WIDE WEB CONFERENCE 2018 (WWW 2018), 2018, : 1045 - 1045
  • [8] BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering
    Wang, Xing David
    Leser, Ulf
    Weber, Leon
    [J]. PROCEEDINGS OF THE 21ST WORKSHOP ON BIOMEDICAL LANGUAGE PROCESSING (BIONLP 2022), 2022, : 298 - 309
  • [9] Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models
    Yannis Papanikolaou
    Grigorios Tsoumakas
    Manos Laliotis
    Nikos Markantonatos
    Ioannis Vlahavas
    [J]. Journal of Biomedical Semantics, 8
  • [10] Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models
    Papanikolaou, Yannis
    Tsoumakas, Grigorios
    Laliotis, Manos
    Markantonatos, Nikos
    Vlahavas, Ioannis
    [J]. JOURNAL OF BIOMEDICAL SEMANTICS, 2017, 8