OOCDB: A Comprehensive, Systematic, and Real-time Organs-on-a-chip Database

被引:2
|
作者
Li, Jian [1 ]
Liang, Weicheng [1 ]
Chen, Zaozao [2 ]
Li, Xingyu [1 ]
Gu, Pan [3 ]
Liu, Anna [1 ]
Chen, Pin [1 ]
Li, Qiwei [2 ]
Mei, Xueyin [1 ]
Yang, Jing [1 ]
Liu, Jun [2 ]
Jiang, Lincao [2 ]
Gu, Zhongze [2 ]
机构
[1] Southeast Univ, Sch Life Sci & Technol, Nanjing 210096, Peoples R China
[2] Southeast Univ, Sch Biol Sci & Med Engn, Nanjing 210096, Peoples R China
[3] Univ Wisconsin, Sch Comp Data & Informat Sci, Madison, WI 53706 USA
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
Database; Organ; Mathematical model; Citation map; Organs-on-a-chip;
D O I
10.1016/j.gpb.2023.01.001
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Organs-on-a-chip is a microfluidic microphysiological system that uses microfluidic technology to analyze the structure and function of living human cells at the tissue and organ levels in vitro. Organs-on-a-chip technology, as opposed to traditional two-dimensional cell culture and animal models, can more closely simulate pathologic and toxicologic interactions between different organs or tissues and reflect the collaborative response of multiple organs to drugs. Despite the fact that many organs-on-a-chip-related data have been published, none of the current databases have all of the following functions: searching, downloading, as well as analyzing data and results from the literature on organs-on-a-chip. Therefore, we created an organs-on-a-chip database (OOCDB) as a platform to integrate information about organs-on-a-chip from various sources, including literature, patents, raw data from microarray and transcriptome sequencing, several open-access datasets of organs-on-a-chip and organoids, and data generated in our laboratory. OOCDB contains dozens of sub-databases and analysis tools, and each sub-database contains various data associated with organs-on-a-chip, with the goal of providing researchers with a comprehensive, systematic, and convenient search engine. Furthermore, it offers a variety of other functions, such as mathematical modeling, three-dimensional modeling, and citation mapping, to meet the needs of researchers and promote the development of organs-on-a-chip. The OOCDB is available at http:// www.organchip.cn.
引用
收藏
页码:243 / 258
页数:16
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