Soil and tree phyllosphere microbial communities differ between coniferous and broadleaf deciduous boreal forests

PurposeNatural and anthropogenic causes have produced changes in tree dominance from coniferous to broadleaf deciduous forests, generating shifts in litter inputs and plant understory composition. The impact of changes in canopy-associated factors on belowground microbial communities remain poorly understood. The objective of this study was to better understand how abiotic and biotic factors in black spruce and trembling aspen forests shape soil microbial community structure.MethodsWith high throughput sequencing, we first analyzed differences in microbial communities between microhabitats (tree phyllosphere vs. soil microbiome) and forest types (black spruce vs. trembling aspen). Second, we analyzed how shifts in factors related to each forest type (litter deposition and understory vegetation) affected soil microbial community composition.ResultsWe found a high microhabitat specificity of bacterial communities interacting with forest type. Shifts in litter deposition and understory vegetation between forest types did not influence microbial community composition, but the legacy effects of each forest type defined soil bacterial and fungal communities. Fungal community composition was more strongly influenced by forest type compared with bacterial communities, and both were correlated with several soil physicochemical properties that differed among forest types.ConclusionThis study expands our knowledge of the microbial composition of tree phyllosphere and soil microbial communities in black spruce and trembling aspen forests and their correlation with abiotic and biotic factors in each forest type. Our study demonstrates the resistance of microorganisms to variation in canopy-related factors and the importance of legacy effects of forest type in defining soil microbial community composition.