A Vertex Network Model of Arabidopsis Leaf Growth

被引:0
|
作者
Andrejek, Luke [1 ]
Best, Janet [1 ]
Chou, Ching-Shan [1 ]
Husbands, Aman [2 ]
机构
[1] Ohio State Univ, Dept Math, Columbus, OH USA
[2] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA
基金
美国国家科学基金会;
关键词
Robustness; Adaxial-abaxial patterning; Mathematical modeling; Gene regulatory networks (GRNs); Transcription factors; Small RNAs; PROTEINS; POLARITY; LEAVES;
D O I
10.1007/s42967-023-00265-x
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Biology provides many examples of complex systems whose properties allow organisms to develop in a highly reproducible, or robust, manner. One such system is the growth and development of flat leaves in Arabidopsis thaliana. This mechanistically challenging process results from multiple inputs including gene interactions, cellular geometry, growth rates, and coordinated cell divisions. To better understand how this complex genetic and cellular information controls leaf growth, we developed a mathematical model of flat leaf production. This two-dimensional model describes the gene interactions in a vertex network of cells which grow and divide according to physical forces and genetic information. Interestingly, the model predicts the presence of an unknown additional factor required for the formation of biologically realistic gene expression domains and iterative cell division. This two-dimensional model will form the basis for future studies into robustness of adaxial-abaxial patterning.
引用
收藏
页码:454 / 488
页数:35
相关论文
共 50 条
  • [1] A Vertex Network Model of Arabidopsis Leaf Growth
    Luke Andrejek
    Janet Best
    Ching-Shan Chou
    Aman Husbands
    [J]. Communications on Applied Mathematics and Computation, 2024, 6 : 454 - 488
  • [2] Network growth model with intrinsic vertex fitness
    Smolyarenko, I. E.
    Hoppe, K.
    Rodgers, G. J.
    [J]. PHYSICAL REVIEW E, 2013, 88 (01):
  • [3] Simulation of regulatory strategies in a morphogen based model of Arabidopsis leaf growth.
    Kuylen, Elise
    Beemster, Gerrit T. S.
    Broeckhove, Jan
    De Vos, Dirk
    [J]. INTERNATIONAL CONFERENCE ON COMPUTATIONAL SCIENCE (ICCS 2017), 2017, 108 : 139 - 148
  • [4] The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth
    Beemster, GTS
    Vercruysse, S
    De Veylder, L
    Kuiper, M
    Inzé, D
    [J]. JOURNAL OF PLANT RESEARCH, 2006, 119 (01) : 43 - 50
  • [5] The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth
    Gerrit T. S. Beemster
    Steven Vercruysse
    Lieven De Veylder
    Martin Kuiper
    Dirk Inzé
    [J]. Journal of Plant Research, 2006, 119 : 43 - 50
  • [6] MODEL FOR LEAF GROWTH
    CHARLESEDWARDS, DA
    [J]. ANNALS OF BOTANY, 1979, 44 (05) : 523 - 535
  • [7] The role of HEXOKINASE1 in Arabidopsis leaf growth
    Van Dingenen, Judith
    Vermeersch, Mattias
    De Milde, Liesbeth
    Hulsmans, Sander
    De Winne, Nancy
    Van Leene, Jelle
    Gonzalez, Nathalie
    Dhondt, Stijn
    De Jaeger, Geert
    Rolland, Filip
    Inze, Dirk
    [J]. PLANT MOLECULAR BIOLOGY, 2019, 99 (1-2) : 79 - 93
  • [8] A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis
    Gonzalez, Nathalie
    Pauwels, Laurens
    Baekelandt, Alexandra
    De Milde, Liesbeth
    Van Leene, Jelle
    Besbrugge, Nienke
    Heyndrickx, Ken S.
    Perez, Amparo Cuellar
    Durand, Astrid Nagels
    De Clercq, Rebecca
    Van De Slijke, Eveline
    Bossche, Robin Vanden
    Eeckhout, Dominique
    Gevaert, Kris
    Vandepoele, Klaas
    De Jaeger, Geert
    Goossens, Alain
    Inze, Dirk
    [J]. PLANT CELL, 2015, 27 (08): : 2273 - 2287
  • [9] The role of HEXOKINASE1 in Arabidopsis leaf growth
    Judith Van Dingenen
    Mattias Vermeersch
    Liesbeth De Milde
    Sander Hulsmans
    Nancy De Winne
    Jelle Van Leene
    Nathalie Gonzalez
    Stijn Dhondt
    Geert De Jaeger
    Filip Rolland
    Dirk Inzé
    [J]. Plant Molecular Biology, 2019, 99 : 79 - 93
  • [10] A gene regulatory network model that recovers the abaxial-adaxial polarity in Arabidopsis thaliana leaf primordium
    Yuste, Mariana
    Pineyro-Nelson, Alma
    Azpeitia, Eugenio
    [J]. FRONTIERS IN ECOLOGY AND EVOLUTION, 2024, 12