Federated learning for molecular discovery

被引:14
|
作者
Hanser, Thierry [1 ]
机构
[1] Lhasa Ltd, Granary Wharf House 2 Canal Wharf, Leeds LS11 5PS, England
关键词
Federated learning; Molecular discovery; Drug discovery; Artificial in- telligence; Machine learning;
D O I
10.1016/j.sbi.2023.102545
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Federated Learning enables machine learning across multiple sources of data and alleviates the risk of leaking private information between partners thereby encouraging knowledge sharing and collaborative modelling. Hence, Federated Learning opens the ways to a new generation of improved models. Domains involving molecular informatics, like Drug Discovery, are progressively adopting Federated Learning; this review describes the main projects and applications of Federated Learning for molecular discovery with a special focus on their benefits and the remaining challenges. All the studies demonstrate a real benefit of Federated Learning, namely the improvement of the performance of models as well as their applicability domain thanks to knowledge aggregation. The selected publications also reveal several remaining challenges to be addressed to fully exploit Federated Learning.
引用
收藏
页数:7
相关论文
共 50 条
  • [1] Optical materials discovery and design with federated databases and machine learning
    Trinquet, Victor
    Evans, Matthew L.
    Hargreaves, Cameron J.
    De Breuck, Pierre-Paul
    Rignanese, Gian-Marco
    FARADAY DISCUSSIONS, 2025, 256 (00) : 459 - 482
  • [2] TDFL: Truth Discovery Based Byzantine Robust Federated Learning
    Xu, Chang
    Jia, Yu
    Zhu, Liehuang
    Zhang, Chuan
    Jin, Guoxie
    Sharif, Kashif
    IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 2022, 33 (12) : 4835 - 4848
  • [3] Data-driven federated learning in drug discovery with knowledge distillation
    Hanser, Thierry
    Ahlberg, Ernst
    Amberg, Alexander
    Anger, Lennart T.
    Barber, Chris
    Brennan, Richard J.
    Brigo, Alessandro
    Delaunois, Annie
    Glowienke, Susanne
    Greene, Nigel
    Johnston, Laura
    Kuhn, Daniel
    Kuhnke, Lara
    Marchaland, Jean-Francois
    Muster, Wolfgang
    Plante, Jeffrey
    Rippmann, Friedrich
    Sabnis, Yogesh
    Schmidt, Friedemann
    van Deursen, Ruud
    Werner, Stephane
    White, Angela
    Wichard, Joerg
    Yukawa, Tomoya
    NATURE MACHINE INTELLIGENCE, 2025, : 423 - 436
  • [4] Multi-party collaborative drug discovery via federated learning
    Huang D.
    Ye X.
    Sakurai T.
    Computers in Biology and Medicine, 2024, 171
  • [5] Federated semantic search using terminological thesauri for learning object discovery
    Koutsomitropoulos, Dimitrios
    Solomou, Georgia
    Kalou, Katerina
    JOURNAL OF ENTERPRISE INFORMATION MANAGEMENT, 2017, 30 (05) : 795 - 808
  • [6] Molecular representation learning for drug discovery
    Schuett, K. T.
    TOXICOLOGY LETTERS, 2024, 399 : S14 - S14
  • [7] Collaborative analysis for drug discovery by federated learning on non-IID data
    Huang, Dong
    Ye, Xiucai
    Zhang, Ying
    Sakurai, Tetsuya
    METHODS, 2023, 219 : 1 - 7
  • [8] kMoL: an open-source machine and federated learning library for drug discovery
    Cozac, Romeo
    Hasic, Haris
    Choong, Jun Jin
    Richard, Vincent
    Beheshti, Loic
    Froehlich, Cyrille
    Koyama, Takuto
    Matsumoto, Shigeyuki
    Kojima, Ryosuke
    Iwata, Hiroaki
    Hasegawa, Aki
    Otsuka, Takao
    Okuno, Yasushi
    JOURNAL OF CHEMINFORMATICS, 2025, 17 (01):
  • [9] MODEL: A Model Poisoning Defense Framework for Federated Learning via Truth Discovery
    Wu, Minzhe
    Zhao, Bowen
    Xiao, Yang
    Deng, Congjian
    Liu, Yuan
    Liu, Ximeng
    IEEE TRANSACTIONS ON INFORMATION FORENSICS AND SECURITY, 2024, 19 : 8747 - 8759
  • [10] Federated Learning
    Ray, Niranjan K.
    Puthal, Deepak
    Ghai, Dhruva
    IEEE CONSUMER ELECTRONICS MAGAZINE, 2021, 10 (06) : 106 - 107