CORAL: probing the structural requirements for α-amylase inhibition activity of 5-(3-arylallylidene)-2-(arylimino)thiazolidin-4-one derivatives based on QSAR with correlation intensity index, molecular docking, molecular dynamics, and ADMET studies

被引:11
|
作者
Singh, Rahul [1 ]
Kumar, Parvin [1 ]
Sindhu, Jayant [2 ]
Kumar, Ashwani [3 ]
Lal, Sohan [1 ]
机构
[1] Kurukshetra Univ, Dept Chem, Kurukshetra, India
[2] CCS Haryana Agr Univ, Dept Chem, COBS&H, Hisar, India
[3] GJUS&T, Dept Pharmaceut Sci, Hisar 125001, Haryana, India
来源
关键词
Thiazolidin-4-one; alpha-Amylase; CORAL; QSAR; ADMET; molecular docking and dynamics; IN-SILICO ADME; PREDICTION; IDEALITY; HYBRIDS; TOOLS;
D O I
10.1080/07391102.2023.2265490
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The present study aims to examine the structural requirements governing a-amylase inhibitory activity of 5-(3-arylallylidene)-2-(arylimino)thiazolidin-4-one derivatives and their precursors by employing a multifaceted approach combining in vitro and in silico studies. The in vitro assay findings revealed strong inhibitory effect of this class of compounds against a-amylase and compound 20 exhibited maximum percentage inhibition of 88.54 +/- 0.69, 84.98 +/- 0.40, 77.26 +/- 0.75, 67.80 +/- 0.54, and 62.93 +/- 1.17 at 200, 100, 50, 25, and 12.5 mg mL(-1), respectively. Multiple CORAL QSAR models were developed from the randomly distributed eight splits by employing two target functions (TF1, TF2 with W-CII = 0.0 and = 0.3, respectively), and the quality of predictions by the produced models was validated with the help of various statistical parameters. The model M-4 (R2Val = 0.8799) and model M-11 (R-Val(2) = 0.9064) were the leading models developed by using TF1 and TF2. We designed five new congeneric inhibitors (D-1 to D-5) by incorporating SMILES features positively correlating with the activity. Molecular docking experiments were carried out to confirm the binding of these new inhibitors with the biological receptor a-amylase (PDB ID: 7TAA). Furthermore, molecular dynamic simulations provided a thorough knowledge of the binding process by shedding insight into the dynamic behavior and stability of the ligand-receptor complex over time. The results of this study highlight the key structural characteristics needed for improved a-amylase inhibitory efficacy and provide a rational basis for the development of more effective inhibitors.
引用
收藏
页码:11861 / 11878
页数:18
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