MD Simulation Reveals Regulation of Mechanical Force and Extracellular Domain 2 on Binding of DNAM-1 to CD155

被引:1
|
作者
Fang, Liping [1 ]
Zhao, Yang [1 ]
Guo, Pei [1 ]
Fang, Ying [1 ]
Wu, Jianhua [1 ]
机构
[1] South China Univ Technol, Inst Biomech, Sch Biol & Biol Engn, Guangzhou 510006, Peoples R China
来源
MOLECULES | 2023年 / 28卷 / 06期
基金
中国国家自然科学基金;
关键词
DNAM-1; CD155; molecular dynamics simulation; structure-function relation; mechano-chemical signaling; CATCH BONDS; ADHESION; MOLECULE; CD226; ACTIVATION; DYNAMICS; LIGANDS; CELLS; VWF;
D O I
10.3390/molecules28062847
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Two extracellular domains of the adhesive receptor DNAM-1 are involved in various cellular biological processes through binding to ligand CD155, usually under a mechano-microenvironment. The first extracellular domain (D1) plays a key role in recognition, but the function of the second extracellular domain (D2) and effects of force on the interaction of DNAM-1 with CD155 remain unclear. We herein studied the interaction of DNAM-1 with CD155 by performing steered molecular dynamics (MD) simulations, and observed the roles of tensile force and D2 on the affinity of DNAM-1 to CD155. The results showed that D2 improved DNAM-1 affinity to CD155; the DNAM-1/CD155 complex had a high mechanical strength and a better mechanical stability for its conformational conservation either at pulling with constant velocity or under constant tensile force (<= 100 pN); the catch-slip bond transition governed CD155 dissociation from DNAM-1; and, together with the newly assigned key residues in the binding site, force-induced conformation changes should be responsible for the mechanical regulation of DNAM-1 ' s affinity to CD155. This work provided a novel insight in understanding the mechanical regulation mechanism and D2 function in the interaction of DNAM-1 with CD155, as well as their molecular basis, relevant transmembrane signaling, and cellular immune responses under a mechano-microenvironment.
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页数:12
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