Multisolitons-like patterns in a one-dimensional MARCKS protein cyclic model

被引:1
|
作者
Fouedji, Chenceline [1 ]
Eteme, Armand Sylvin [1 ]
Tabi, Conrad Bertrand [2 ]
Fouda, Henri Paul Ekobena [1 ]
Kofane, Timoleon Crepin [3 ]
机构
[1] Univ Yaounde I, Fac Sci, Dept Phys, Lab Biophys, POB 812, Yaounde, Cameroon
[2] Botswana Int Univ Sci & Technol, P-Bag 16, Palapye, Botswana
[3] Univ Yaounde I, Fac Sci, Dept Phys, Lab Mech, POB 812, Yaounde, Cameroon
关键词
MARCKS protein; Long wavelength instability; Patterns formation; Multisolitons; C-KINASE SUBSTRATE; PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE; BISOLITON MECHANISM; EFFECTOR DOMAIN; PHOSPHORYLATION; PEPTIDE; BINDING; CA2+; INHIBITION; PRESSURE;
D O I
10.1016/j.jtbi.2023.111702
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this paper, we study the nonlinear dynamics of the MARCKS protein between cytosol and cytoplasmic membrane through the modulational instability phenomenon. The reaction-diffusion generic model used here is firstly transformed into a cubic complex Ginzburg-Landau equation. Then, modulational instability (MI) is carried out in order to derive the MI criteria. We find the domains of some parameter space where nonlinear patterns are expected in the model. The analytical results on the MI growth rate predict that phosphorylation and binding rates affect MARCKS dynamics in opposite way: while the phosphorylation rate tends to support highly localized structures of MARCKS, the binding rate in turn tends to slow down such features. On the other hand, self-diffusion process always amplifies the MI phenomenon. These predictions are confirmed by numerical simulations. As a result, the cyclic transport of MARCKS protein from membrane to cytosol may be done by means of multisolitons-like patterns.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Pattern formation in a one-dimensional MARCKS protein cyclic model with spatially inhomogeneous diffusion coefficients
    Chenceline Fouedji
    Armand Sylvin Etémé
    Conrad Bertrand Tabi
    Henri Paul Ekobena Fouda
    [J]. The European Physical Journal Plus, 138
  • [2] Pattern formation in a one-dimensional MARCKS protein cyclic model with spatially inhomogeneous diffusion coefficients
    Fouedji, Chenceline
    Eteme, Armand Sylvin
    Tabi, Conrad Bertrand
    Fouda, Henri Paul Ekobena
    [J]. EUROPEAN PHYSICAL JOURNAL PLUS, 2023, 138 (11):
  • [3] One-dimensional Ising model applied to protein folding
    Bakk, A
    Hoye, JS
    [J]. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2003, 323 : 504 - 518
  • [4] ONE-DIMENSIONAL PERTURBATIONS OF CYCLIC OPERATORS
    FEINTUCH, A
    [J]. LINEAR ALGEBRA AND ITS APPLICATIONS, 1977, 18 (02) : 171 - 174
  • [5] SYSTEMS FOR GENERATING ONE-DIMENSIONAL PATTERNS
    ROSENFELD, A
    GOLDSTEIN, A
    [J]. APPLIED OPTICS, 1964, 3 (04): : 547 - &
  • [6] ONE-DIMENSIONAL CIRCULAR DIFFRACTION PATTERNS
    DAIMON, H
    INO, S
    [J]. SURFACE SCIENCE, 1989, 222 (01) : 274 - 282
  • [7] PAC learning of one-dimensional patterns
    Goldberg, PW
    Goldman, SA
    Scott, SD
    [J]. MACHINE LEARNING, 1996, 25 (01) : 51 - 70
  • [8] Noisy precursors in one-dimensional patterns
    Agez, G
    Szwaj, C
    Louvergneaux, E
    Glorieux, P
    [J]. PHYSICAL REVIEW A, 2002, 66 (06): : 4
  • [9] One-dimensional cell motility patterns
    Ron, Jonathan E.
    Monzo, Pascale
    Gauthier, Nils C.
    Voituriez, Raphael
    Gov, Nir S.
    [J]. PHYSICAL REVIEW RESEARCH, 2020, 2 (03):
  • [10] CHAOS IN PROTEIN-FOLDING - A SIMPLE ONE-DIMENSIONAL MODEL
    THOMAS, DJ
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1995, 174 (03) : 299 - 311