<bold>Identification of key genes of diabetic cardiomyopathy in </bold><bold>hiPSCs-CM</bold>s <bold>based on bioinformatics analysis</bold>

被引:2
|
作者
An, Shuo [1 ,4 ,5 ]
Bi, Hongchen [1 ]
Luo, Xiaoli [1 ]
Zhu, Caiying [2 ,3 ]
Wang, Min [1 ]
Pang, Aiming [2 ,3 ]
Cui, Yujie [1 ]
机构
[1] Tianjin Med Univ, Sch Med Lab, Tianjin 300203, Peoples R China
[2] Chinese Acad Med Sci & Peking Union Med Coll, Inst Hematol,State Key Lab Expt Hematol, Hematopoiet Stem Cell Transplantat Ctr, Natl Clin Res Ctr Blood Dis,Haihe Lab Cell Ecosyst, Tianjin 300020, Peoples R China
[3] Chinese Acad Med Sci & Peking Union Med Coll, Blood Dis Hosp, Natl Clin Res Ctr Blood Dis, Haihe Lab Cell Ecosyst, Tianjin 300020, Peoples R China
[4] Tianjin Med Univ Canc Inst & Hosp, Natl Clin Res Ctr Canc, Key Lab Canc Prevent & Therapy, Tianjins Clin Res Ctr Canc,Dept Clin Lab, Tianjin 300060, Peoples R China
[5] Tianjin Key Lab Canc Prevent & Therapy, Tianjin 300060, Peoples R China
基金
中国国家自然科学基金;
关键词
Diabetic cardiomyopathy; Differentially expressed genes; Bioinformatics; Transcriptomics; hiPSCs-CMs;
D O I
10.1007/s11010-023-04915-9
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Diabetic cardiomyopathy (DbCM) is one of the most common vascular complications of diabetes, and can cause heart failure and threaten the life of patients. The pathogenesis is complex, and key genes have not fully identified. In this study, bioinformatics analysis was used to predict DbCM-related gene targets. Published datasets from the NCBI Gene Expression Omnibus with accession numbers GSE62203 and GSE197850 were selected for analysis. Differentially expressed genes (DEGs) were identified by the online tool GEO2R. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using the DAVID online database. Protein-protein interaction network construction and hub gene identification were performed using STRING and Cytoscape. We used 30 mM and 1 mu M hydrocortisone-stimulated AC16 cells as an in vitro model of diabetic cardiomyopathy. Quantitative real-time PCR (qRT-PCR) was performed to validate the expression levels of hub genes. A total of 73 common DEGs were identified in both datasets, including 47 upregulated and 26 downregulated genes. GO and KEGG pathway enrichment analyses revealed that the DEGs were significantly enriched in metabolism, hypoxia response, apoptosis, cell proliferation regulation, and cytoplasmic and HIF signalling pathways. The top 10 hub genes were LDHA, PGK1, SLC2A1, ENO1, PFKFB3, EGLN1, MYC, PDK1, EGLN3 and BNIP3. In our in vitro study, we found that PGK1, SLC2A1, PFKFB3, EGLN1, MYC, EGLN3 and BNIP3 were upregulated, ENO1 was downregulated, and LDHA was unchanged. Except for PGK1 and ENO1, these hub genes have been previously reported to be involved in DbCM. In summary, we identified DEGs and hub genes and first reported PGK1 and ENO1 in DbCM, which may serve as potential candidate genes for DbCM targeted therapy.
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页数:12
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