Investigating microbiome and transcriptome data to uncover the key microbial community involved in lignocellulose degradation within the Deulajhari hot spring consortium

被引:0
|
作者
Dixit, Sangita [1 ]
Sahoo, Kalpana [1 ]
Gaur, Mahendra [2 ]
Subudhi, Enketeswara [1 ,3 ]
机构
[1] Siksha O Anusandhan Univ, Ctr Biotechnol, Sch Pharmaceut Sci, Bhubaneswar, India
[2] Siksha O Anusandhan Univ, Sch Pharmaceut Sci, Drug Dev & Anal Lab, Bhubaneswar, India
[3] Siksha O Anusandhan Univ, Ctr Biotechnol, Sch Pharmaceut Sci, Bhubaneswar 751003, Odisha, India
来源
DATA IN BRIEF | 2023年 / 51卷
关键词
Hotspring; Consortium; Microbiome; Metagenomics; Metatranscriptomics; Lignocellulose;
D O I
10.1016/j.dib.2023.109648
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
datasets. Proteobacteria exhibited the highest relative abundance in the metagenomics dataset, while Firmicutes was highly abundant in the metatranscriptomics dataset. At the genus level, a total of 92 and 25 genera were predicted in both datasets, with lignocellulose degrading Meiothermus being highly abundant in both metagenomics and metatranscriptomics datasets. We also observed that the unknown bacteria and unidentified sequences were found in significant proportion in the metatranscriptomics dataset. We assembled and functionally annotated approximately 23,960 contigs using the Prokka pipeline. Among the SEED category, the most expressed and annotated microbial genes fall under the un-known category as well as Biotin synthesis and their utilization. Furthermore, some of these genes were implicated in the degradation of aromatic amino acids, D-mannitol, and D-mannose. These findings contribute to our understanding of how the composition and abundance of bacterial communities facilitate lignocellulose degradation in extreme environments and biofuel generation.(c) 2023 Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)
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