Intrinsically disordered proteins and conformational noise: The hypothesis a decade later
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作者:
Kulkarni, Prakash
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City Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USA
City Hope Natl Med Ctr, Dept Syst Biol, Duarte, CA 91010 USACity Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USA
Kulkarni, Prakash
[1
,2
]
Salgia, Ravi
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City Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USACity Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USA
Salgia, Ravi
[1
]
Rangarajan, Govindan
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机构:
Indian Inst Sci, Dept Math, Bangalore 560012, India
Indian Inst Sci, Ctr Neurosci, Bangalore 560012, IndiaCity Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USA
Rangarajan, Govindan
[3
,4
]
机构:
[1] City Hope Natl Med Ctr, Dept Med Oncol & Therapeut Res, Duarte, CA 91010 USA
[2] City Hope Natl Med Ctr, Dept Syst Biol, Duarte, CA 91010 USA
[3] Indian Inst Sci, Dept Math, Bangalore 560012, India
[4] Indian Inst Sci, Ctr Neurosci, Bangalore 560012, India
Phenotypic plasticity is the ability of individual genotypes to produce different phenotypes in response to environmental perturbations. We previously postulated how conformational noise emanating from conformational dynamics of intrinsically disordered proteins (IDPs) which is distinct from transcriptional noise, can contribute to phenotypic switching by rewiring the cellular protein interaction network. Since most transcription factors are IDPs, we posited that conformational noise is an integral component of transcriptional noise implying that IDPs may amplify total noise in the system either stochastically or in response to environmental changes. Here, we review progress in elucidating the details of the hypothesis. We highlight empirical evidence supporting the hypothesis, discuss conceptual advances that underscore its fundamental importance and implications, and identify areas for future investigations.
机构:
CALTECH, Div Bioengn, Pasadena, CA 91125 USACALTECH, Div Bioengn, Pasadena, CA 91125 USA
Mahmoudabadi, Gita
Rajagopalan, Krithika
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Johns Hopkins Univ, Sch Med, Dept Urol, Baltimore, MD 21205 USACALTECH, Div Bioengn, Pasadena, CA 91125 USA
Rajagopalan, Krithika
Getzenberg, Robert H.
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Johns Hopkins Univ, Sch Med, Dept Urol, Baltimore, MD 21205 USACALTECH, Div Bioengn, Pasadena, CA 91125 USA
Getzenberg, Robert H.
Hannenhalli, Sridhar
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机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
Univ Maryland, Ctr Bioinformat & Computat Biol, College Pk, MD 20742 USACALTECH, Div Bioengn, Pasadena, CA 91125 USA
Hannenhalli, Sridhar
Rangarajan, Govindan
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Indian Inst Sci, Dept Math, Bangalore 560012, Karnataka, India
Indian Inst Sci, Ctr Neurosci, Bangalore 560012, Karnataka, IndiaCALTECH, Div Bioengn, Pasadena, CA 91125 USA
Rangarajan, Govindan
Kulkarni, Prakash
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机构:
Johns Hopkins Univ, Sch Med, Dept Urol, Baltimore, MD 21205 USACALTECH, Div Bioengn, Pasadena, CA 91125 USA
机构:
Univ Copenhagen, Linderstrom Lang Ctr Prot Sci, Dept Biol, DK-2200 N Copenhagen N, DenmarkUniv Copenhagen, Linderstrom Lang Ctr Prot Sci, Dept Biol, DK-2200 N Copenhagen N, Denmark
Thomasen, F. Emil
Lindorff-Larsen, Kresten
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Univ Copenhagen, Linderstrom Lang Ctr Prot Sci, Dept Biol, DK-2200 N Copenhagen N, DenmarkUniv Copenhagen, Linderstrom Lang Ctr Prot Sci, Dept Biol, DK-2200 N Copenhagen N, Denmark