Zeimonas sediminis sp. nov., isolated from mangrove sediment

被引:0
|
作者
Li, Jiayi [1 ,2 ]
Liu, Lirui [1 ,2 ]
Huang, Yuhan [1 ,2 ]
Pan, Jie [1 ,3 ]
Li, Meng [1 ,2 ]
机构
[1] Shenzhen Univ, Inst Adv Study, Archaeal Biol Ctr, Shenzhen 518057, Peoples R China
[2] Shenzhen Univ, Inst Adv Study, Shenzhen Key Lab Marine Microbiome Engn, Shenzhen 518057, Peoples R China
[3] Shenzhen Xbiome Biotech Co Ltd, Shenzhen 518058, Guangdong, Peoples R China
关键词
Burkholderiaceae; mangrove sediment; novel isolate; polyphasic taxonomy; SEQUENCE; EXTRACTION; DATABASE;
D O I
10.1099/ijsem.0.005673
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram- stain-negative, strictly aerobic, motile, rod-shaped bacterium, FT117T, was isolated from mangrove sediment collected in Shenzhen, Guangdong, PR China. Growth occurred at 20-45 degrees C (optimum, 40 degrees C), pH 6-10 (optimum, 8) and in the presence of 0-5 % NaCl (optimum, 0 %). The results of 16S rRNA gene sequence analysis indicated that the identity between FT117T and Zeimonas arvi CC-CFT501T was the highest (98.7 %), followed by Quisquiliibacterium transsilvanicum JCM 31785T (93.6 %), Lautro-pia mirabilis CCUG 34794T (93.6 %) and Pandoraea eparura LMG 31012T (93.5 %). The main fatty acids (>10 %) were C16: 0 (35.8 %), cyclo-C17: 0 (18.5 %) and summed feature 3 (18.1 %). The polar lipids contained phosphatidylethanolamine, diphosphatidylglyc-erol, phosphatidylglycerol, two unidentified phospholipids, two unidentified aminophospholipids and one unidentified lipid. The sole respiratory quinone was ubiquinone-8 (Q-8). Its DNA G+C content was 70.6 % (data from the genome sequence) and the estimated genome size was 3.860 Mb. The average nucleotide identity values between the FT117T genome and the genomes of Z. arvi CC-CFT501T, Q. transsilvanicum JCM 31785T, L. mirabilis CCUG 34794T and Paraburkholderia strydomiana LMG 31012T were 85.4 %, 76.4 %, 73.0 % and 71.3 %, and the digital DNA-DNA hybridization values were 29.1 %, 21.0 %, 20.3 % and 19.1 %, respec-tively. The phylogenetic, phenotypic and chemotaxonomic differences between FT117T and its phylogenetic relatives indicate that FT117T should be regarded as representing a novel species within the genus Zeimonas, for which the name Zeimonas sediminis sp. nov. is proposed. The type strain is FT117T (=KCTC 92314T = MCCC 1K07396T).
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页数:8
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