Sensitivity is crucially important for surface-enhanced Raman spectroscopy(SERS) application to detect trace-level polycyclic aromatic hydrocarbons(PAHs) in the seawater. In this study, a high sensitivity three-dimensional(3-D) SERS substrate composed with syringe filter, glycidyl methacrylate-ethylene dimethacrylate(GMA-EDMA) porous material and optimal parameters(57 nm, pH 13) gold nanoparticles(Au NPs) was developed for the detection of PAHs in water. The enhancement effect and repeatability of this 3-D substrate were also explored. The Raman intensity of pyrene using 3-D SERS substrate is about 8 times higher than that of substrate only using p H 13 gold colloid solution and about 12 times higher than that of substrate using natural Au NPs and GMA-EDMA porous material, which means both the pH 13 AuN Ps and the GMA-EDMA porous material are important factors for the sensitivity of this 3-D SERS substrate. Good repeatability of this optimal 3-D substrate was obtained. The relative standard deviation(RSD) is less than 8.66% on the same substrate and less than 3.69% on other different substrates. Four kinds of PAHs, i.e., phenanthrene, pyrene, benzo(a)pyrene, benzo(k)fluoranthene and their mixture, were detected at the different concentrations. Their limits of detection(LODs) are 8.3×10(phenanthrene), 2.1×10(pyrene), 3.8×10(benzo(a)pyrene) and 1.7×10mol L-1(benzo(k)fluoranthene), respectively. In addition, these four PAHs were also detected by fluorescence spectroscopy to evaluate the sensitivity of SERS technology using this optimal 3-D SERS substrate. The results showed that the sensitivity of SERS based on the 3-D SERS substrate even using the portable Raman system was closed to that of fluorescence spectroscopy. Therefore, the SERS technology using this optimal 3-D substrate is expected to be an in-situ method for the detection of environmental PAHs.