Robust capturing chromosome conformation using the DLO Hi-C 2.0 method

被引:0
|
作者
Zhihui Zhang [1 ,2 ]
Chengchao Wu [1 ,2 ]
Khaista Rahman [1 ,2 ]
Weize Xu [1 ,2 ]
Guoliang Li [3 ,4 ,5 ]
Da Lin [1 ,2 ,6 ]
Gang Cao [1 ,2 ,6 ]
机构
[1] State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University
[2] College of Veterinary Medicine, Huazhong Agricultural University
[3] National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
[4] Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, Huazhong Agricultural University
[5] College of Informatics, Huazhong Agricultural University
[6] College of Bio-Medicine and Health, Huazhong Agricultural University
基金
中国国家自然科学基金; 中国博士后科学基金; 中央高校基本科研业务费专项资金资助;
关键词
D O I
暂无
中图分类号
Q343.2 [染色体理论(染色体遗传学)];
学科分类号
071007 ; 090102 ;
摘要
The human genome contains around 20,000 protein-coding genes and a vast of transcriptional regulatory elements(ENCODE Project Consortium, 2012; Roadmap Epigenomics Consortium et al., 2015; Stunnenberg and Hirst, 2016). It still remains elusive how these regulatory elements regulate their target genes across genomic distances of millions of bases.
引用
收藏
页码:655 / 658
页数:4
相关论文
共 50 条
  • [1] Robust capturing chromosome conformation using the DLO Hi-C 2.0 method
    Zhang, Zhihui
    Wu, Chengchao
    Rahman, Khaista
    Xu, Weize
    Li, Guoliang
    Lin, Da
    Cao, Gang
    [J]. JOURNAL OF GENETICS AND GENOMICS, 2020, 47 (10) : 655 - 658
  • [2] The DLO Hi-C Tool for Digestion-Ligation-Only Hi-C Chromosome Conformation Capture Data Analysis
    Hong, Ping
    Jiang, Hao
    Xu, Weize
    Lin, Da
    Xu, Qian
    Cao, Gang
    Li, Guoliang
    [J]. GENES, 2020, 11 (03)
  • [3] Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
    Belaghzal, Houda
    Dekker, Job
    Gibcus, Johan H.
    [J]. METHODS, 2017, 123 : 56 - 65
  • [4] DLO Hi-C染色体构象捕获技术
    林达
    洪萍
    李国亮
    曹罡
    [J]. 南京农业大学学报, 2018, 41 (04) : 577 - 579
  • [5] Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform
    Sandoval-Velasco, Marcela
    Antonio Rodriguez, Juan
    Estrada, Cynthia Perez
    Zhang, Guojie
    Aiden, Erez Lieberman
    Marti-Renom, Marc A.
    Gilbert, M. Thomas P.
    Smith, Oliver
    [J]. GIGASCIENCE, 2020, 9 (08):
  • [6] Digestion-ligation-only Hi-C is an efficient and cost-effective method for chromosome conformation capture
    Da Lin
    Ping Hong
    Siheng Zhang
    Weize Xu
    Muhammad Jamal
    Keji Yan
    Yingying Lei
    Liang Li
    Yijun Ruan
    Zhen F. Fu
    Guoliang Li
    Gang Cao
    [J]. Nature Genetics, 2018, 50 : 754 - 763
  • [7] Digestion-ligation-only Hi-C is an efficient and cost-effective method for chromosome conformation capture
    Lin, Da
    Hong, Ping
    Zhang, Siheng
    Xu, Weize
    Jamal, Muhammad
    Yan, Keji
    Lei, Yingying
    Li, Liang
    Ruan, Yijun
    Fu, Zhen F.
    Li, Guoliang
    Cao, Gang
    [J]. NATURE GENETICS, 2018, 50 (05) : 754 - +
  • [8] Chromatin conformation analysis of primary patient tissue using a low input Hi-C method
    Diaz, Noelia
    Kruse, Kai
    Erdmann, Tabea
    Staiger, Annette M.
    Ott, German
    Lenz, Georg
    Vaquerizas, Juan M.
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [9] Chromatin conformation analysis of primary patient tissue using a low input Hi-C method
    Noelia Díaz
    Kai Kruse
    Tabea Erdmann
    Annette M. Staiger
    German Ott
    Georg Lenz
    Juan M. Vaquerizas
    [J]. Nature Communications, 9
  • [10] Principles of Chromosome Architecture Revealed by Hi-C
    Eagen, Kyle P.
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 2018, 43 (06) : 469 - 478