Annotation Practices in Computational Pathology: A European Society of Digital and Integrative Pathology (ESDIP) Survey Study

被引:0
|
作者
Montezuma, Diana [1 ,2 ,3 ]
Oliveira, Sara P. [1 ,4 ]
Tolkach, Yuri [1 ,5 ]
Boor, Peter [1 ,6 ]
Haragan, Alex [1 ,7 ]
Carvalho, Rita [1 ,8 ]
Della Mea, Vincenzo [1 ,9 ]
Kiehl, Tim-Rasmus [1 ,10 ,11 ,12 ]
Leh, Sabine [1 ,13 ,14 ]
Yousif, Mustafa [1 ,15 ]
Ameisen, David [1 ,16 ]
Serbanescu, Mircea-Sebastian [1 ,17 ]
Zerbe, Norman [1 ,6 ,10 ,11 ,12 ]
L'Imperio, Vincenzo [1 ,18 ,19 ]
机构
[1] European Soc Digital & Integrat Pathol ESDIP, Lisbon, Portugal
[2] IMP Diagnost, Res & Dev Unit, Porto, Portugal
[3] Porto Comprehens Canc Ctr Raquel Seruca, Portuguese Oncol Inst Porto, Canc Biol & Epigenet Grp, Res Ctr Portuguese Oncol,Inst Porto,RISE Res Ctr P, Porto, Portugal
[4] Netherlands Canc Inst, Dept Mol Pathol, Amsterdam, Netherlands
[5] Univ Hosp Cologne, Inst Pathol, Cologne, Germany
[6] Rhein Westfal TH Aachen, Univ Clin Aachen, Aachen, Germany
[7] Royal Liverpool Univ Hosp, Dept Cellular Pathol, Liverpool, England
[8] Helios Klinikum Emil Behring, Dept Pathol, Berlin, Germany
[9] Univ Udine, Dept Math Comp Sci & Phys, Udine, Italy
[10] Charite Univ Med Berlin, Berlin, Germany
[11] Free Univ Berlin, Berlin, Germany
[12] Humboldt Univ, Inst Med Informat, Berlin, Germany
[13] UNIV BERGEN, HAUKELAND HOSP,DEPT PATHOL, BERGEN, Norway
[14] Univ Bergen, Dept Clin Med, Bergen, Norway
[15] Univ Michigan, Dept Pathol, Med Sch, Ann Arbor, MI USA
[16] LLF, Paris, France
[17] Univ Med & Pharm Craiova, Dept Med Informat & Biostat, Craiova, Romania
[18] Univ Milano Bicocca, Sch Med & Surg, Milan, Italy
[19] Fdn IRCCS San Gerardo Tintori, Dept Pathol, Monza, Italy
关键词
annotation; digital pathology; European Society of Digital and Integrative Pathology; survey;
D O I
10.1016/j.labinv.2024.102203
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Integrating digital pathology and artificial intelligence (AI) algorithms can potentially improve diagnostic practice and precision medicine. Developing reliable, generalizable, and comparable AI algorithms depends on access to meticulously annotated data. However, achieving this requires robust collaboration among pathologists, computer scientists, and other researchers to ensure data quality and consistency. The lack of standardization and scalability is a significant challenge when generating annotations and annotated data sets. Recognizing these limitations, the Scientific Committee of the European Society of Digital and Integrative Pathology (ESDIP) performed a comprehensive international survey to understand the current state of annotation practices and identify actionable areas to address critical needs in the annotation process. The analysis and summary of the survey results provide several insights for all stakeholders involved in data preparation and ground truthing, ultimately contributing to the advancement of AI in computational pathology. (c) 2024 THE AUTHORS. Published by Elsevier Inc. on behalf of the United States & Canadian Academy of Pathology. This is an open access article under the CC BY license (http:// creativecommons.org/licenses/by/4.0/).
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Best Practice Recommendations for the Implementation of a Digital Pathology Workflow in the Anatomic Pathology Laboratory by the European Society of Digital and Integrative Pathology (ESDIP)
    Fraggetta, Filippo
    L'Imperio, Vincenzo
    Ameisen, David
    Carvalho, Rita
    Leh, Sabine
    Kiehl, Tim-Rasmus
    Serbanescu, Mircea
    Racoceanu, Daniel
    Della Mea, Vincenzo
    Polonia, Antonio
    Zerbe, Norman
    Eloy, Catarina
    DIAGNOSTICS, 2021, 11 (11)
  • [2] Future Practices of Breast Pathology Using Digital and Computational Pathology
    Hanna, Matthew G.
    Brogi, Edi
    ADVANCES IN ANATOMIC PATHOLOGY, 2023, 30 (06) : 421 - 433
  • [3] Digital transformation of pathology - the European Society of Pathology expert opinion paper
    Eloy, Catarina
    Fraggetta, Filippo
    van Diest, Paul J.
    Polonia, Antonio
    Curado, Monica
    Temprana-Salvador, Jordi
    Zlobec, Inti
    Purqueras, Elvira
    Weis, Cleo-Aron
    Matias-Guiu, Xavier
    Schirmacher, Peter
    Ryska, Ales
    VIRCHOWS ARCHIV, 2025,
  • [4] Computational Nuclei Segmentation Methods in Digital Pathology: A Survey
    Tomohiro Hayakawa
    V. B. Surya Prasath
    Hiroharu Kawanaka
    Bruce J. Aronow
    Shinji Tsuruoka
    Archives of Computational Methods in Engineering, 2021, 28 : 1 - 13
  • [5] Computational Nuclei Segmentation Methods in Digital Pathology: A Survey
    Hayakawa, Tomohiro
    Prasath, V. B. Surya
    Kawanaka, Hiroharu
    Aronow, Bruce J.
    Tsuruoka, Shinji
    ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING, 2021, 28 (01) : 1 - 13
  • [6] Results of the European Society of Toxicologic Pathology Survey on the Use of Artificial Intelligence in Toxicologic Pathology
    Palazzi, Xavier
    Barale-Thomas, Erio
    Bawa, Bhupinder
    Carter, Jonathan
    Janardhan, Kyathanahalli
    Marxfeld, Heike
    Nyska, Abraham
    Saravanan, Chandrassegar
    Schaudien, Dirk
    Schumacher, Vanessa L.
    Spaet, Robert H.
    Tangermann, Simone
    Turner, Oliver C.
    Vezzali, Enrico
    TOXICOLOGIC PATHOLOGY, 2023, 51 (04) : 216 - 224
  • [7] Newsletter of the European Society of Pathology
    Niki J. Agnantis
    Colin Berry
    Virchows Archiv, 2002, 440 (5) : 557 - 571