Inferring enhancer activity from cell-free DNA fragmentation patterns

被引：0
|
作者：
Yang, Alexis
机构：
来源：
CLINICAL CANCER RESEARCH | 2024年 / 30卷 / 21期
关键词：
D O I：
10.1158/1557-3265.LIQBIOP24-B068
中图分类号：
R73 [肿瘤学];
学科分类号：
100214 ;
摘要：
B068
引用
收藏
页数：2
相关论文
共 50 条
  • [1] Inferring gene expression from cell-free DNA fragmentation profiles
    Mohammad Shahrokh Esfahani
    Emily G. Hamilton
    Mahya Mehrmohamadi
    Barzin Y. Nabet
    Stefan K. Alig
    Daniel A. King
    Chloé B. Steen
    Charles W. Macaulay
    Andre Schultz
    Monica C. Nesselbush
    Joanne Soo
    Joseph G. Schroers-Martin
    Binbin Chen
    Michael S. Binkley
    Henning Stehr
    Jacob J. Chabon
    Brian J. Sworder
    Angela B-Y Hui
    Matthew J. Frank
    Everett J. Moding
    Chih Long Liu
    Aaron M. Newman
    James M. Isbell
    Charles M. Rudin
    Bob T. Li
    David M. Kurtz
    Maximilian Diehn
    Ash A. Alizadeh
    Nature Biotechnology, 2022, 40 : 585 - 597
  • [2] Inferring gene expression from cell-free DNA fragmentation profiles
    Esfahani, Mohammad Shahrokh
    Hamilton, Emily G.
    Mehrmohamadi, Mahya
    Nabet, Barzin Y.
    Alig, Stefan K.
    King, Daniel A.
    Steen, Chloe B.
    Macaulay, Charles W.
    Schultz, Andre
    Nesselbush, Monica C.
    Soo, Joanne
    Schroers-Martin, Joseph G.
    Chen, Binbin
    Binkley, Michael S.
    Stehr, Henning
    Chabon, Jacob J.
    Sworder, Brian J.
    Hui, Angela B-Y
    Frank, Matthew J.
    Moding, Everett J.
    Liu, Chih Long
    Newman, Aaron M.
    Isbell, James M.
    Rudin, Charles M.
    Li, Bob T.
    Kurtz, David M.
    Diehn, Maximilian
    Alizadeh, Ash A.
    NATURE BIOTECHNOLOGY, 2022, 40 (04) : 585 - +
  • [3] Cell-Free DNA Fragmentation Patterns in a Cancer Cell Line
    Ungerer, Vida
    Bronkhorst, Abel J.
    Uhlig, Carsten
    Holdenrieder, Stefan
    DIAGNOSTICS, 2022, 12 (08)
  • [4] FinaleDB: a browser and database of cell-free DNA fragmentation patterns
    Zheng, Haizi
    Zhu, Michelle S.
    Liu, Yaping
    BIOINFORMATICS, 2021, 37 (16) : 2502 - 2503
  • [5] FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
    Yaping Liu
    Sarah C. Reed
    Christopher Lo
    Atish D. Choudhury
    Heather A. Parsons
    Daniel G. Stover
    Gavin Ha
    Gregory Gydush
    Justin Rhoades
    Denisse Rotem
    Samuel Freeman
    David W. Katz
    Ravi Bandaru
    Haizi Zheng
    Hailu Fu
    Viktor A. Adalsteinsson
    Manolis Kellis
    Nature Communications, 15
  • [6] FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
    Liu, Yaping
    Reed, Sarah C.
    Lo, Christopher
    Choudhury, Atish D.
    Parsons, Heather A.
    Stover, Daniel G.
    Ha, Gavin
    Gydush, Gregory
    Rhoades, Justin
    Rotem, Denisse
    Freeman, Samuel
    Katz, David W.
    Bandaru, Ravi
    Zheng, Haizi
    Fu, Hailu
    Adalsteinsson, Viktor A.
    Kellis, Manolis
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [7] Cancer cell-free DNA fragmentation profile
    Krasic, J.
    Skara, L.
    Bojanac, A. Katusic
    Ulamec, M.
    Jezek, D.
    Kulis, T.
    Sincic, N.
    FEBS OPEN BIO, 2022, 12 : 73 - 73
  • [8] Fragmentation patterns and personalized sequencing of cell-free DNA in urine and plasma of glioma patients
    Mouliere, Florent
    Smith, Christopher G.
    Heider, Katrin
    Su, Jing
    van der Pol, Ymke
    Thompson, Mareike
    Morris, James
    Wan, Jonathan C. M.
    Chandrananda, Dineika
    Hadfield, James
    Grzelak, Marta
    Hudecova, Irena
    Couturier, Dominique-Laurent
    Cooper, Wendy
    Zhao, Hui
    Gale, Davina
    Eldridge, Matthew
    Watts, Colin
    Brindle, Kevin
    Rosenfeld, Nitzan
    Mair, Richard
    EMBO MOLECULAR MEDICINE, 2021, 13 (08)
  • [9] Non-random fragmentation patterns in circulating cell-free DNA reflect epigenetic regulation
    Maxim Ivanov
    Ancha Baranova
    Timothy Butler
    Paul Spellman
    Vladislav Mileyko
    BMC Genomics, 16
  • [10] Fragmentation patterns of cell-free DNA and somatic mutations in the urine of metastatic breast cancer patients
    Lin, Shaoyan
    Wang, Shusen
    Xu, Binghe
    JOURNAL OF CANCER RESEARCH AND THERAPEUTICS, 2024, 20 (02) : 563 - 569
12345