Interactive Earth system data cube visualization in Jupyter notebooks

被引:0
|
作者
Sochting, Maximilian [1 ,2 ,3 ]
Scheuermann, Gerik [3 ,4 ]
Montero, David [1 ,2 ,5 ]
Mahecha, Miguel D. [1 ,2 ,4 ,5 ]
机构
[1] Univ Leipzig, Remote Sensing Ctr Earth Syst Res RSC4Earth, Talstr 35, D-04103 Leipzig, Germany
[2] Univ Leipzig, Inst Earth Syst Res & Remote Sensing, Leipzig, Germany
[3] Univ Leipzig, Image & Signal Proc Grp, Leipzig, Germany
[4] ScaDS AI, Ctr Scalable Data Analyt & Artificial Intelligence, Dresden Leipzig, Germany
[5] German Ctr Integrat Biodivers Res iDiv, Halle Jena Leipzig, Germany
关键词
Interactive visualization; Earth system data cubes; Jupyter notebooks; MODEL;
D O I
10.1080/20964471.2025.2471646
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Visualization is key for interpreting the rapid growth of gridded, spatio-temporal data sets in Earth system sciences. However, today's tools are often designed as standalone applications, insufficiently integrated into scientific workflows, and typically not designed for directly interacting with data. Here, we introduce "Lexcube for Jupyter", an open-source tool designed to facilitate the interactive visualization of 3D data cubes within Jupyter notebooks. This integration aims to empower researchers to more effectively interpret complex datasets, e.g. during model development, data curation, or for model-data comparisons. Lexcube for Jupyter builds upon the established Lexcube.org architecture by S & ouml;chting et al. (2024), but is substantially advanced in order to make it part of a scientific Python workflow. Lexcube for Jupyter includes efficient data handling strategies, such as chunked data access and caching, as well as the implementation of LZ4 compression to optimize performance during interactive sessions. Employing the described techniques, Lexcube for Jupyter significantly reduces data processing and visualization times compared to existing tools, facilitating real-time data exploration.
引用
收藏
页数:15
相关论文
共 50 条
  • [1] Interactive Data Visualization in Jupyter Notebooks
    Piazentin Ono, Jorge
    Freire, Juliana
    Silva, Claudio T.
    COMPUTING IN SCIENCE & ENGINEERING, 2021, 23 (02) : 99 - 106
  • [2] Interactive network visualization in Jupyter notebooks: visJS']JS2jupyter
    Rosenthal, Sara Brin
    Len, Julia
    Webster, Mikayla
    Gary, Aaron
    Birmingham, Amanda
    Fisch, Kathleen M.
    BIOINFORMATICS, 2018, 34 (01) : 126 - 128
  • [3] Integrating Interactive Jupyter Notebooks at the BNL SDCC
    Rind, Ofer
    Strecker-Kellogg, William
    Allan, Daniel
    Benjamin, Douglas
    Karasawa, Mizuki
    Li, Kristy
    24TH INTERNATIONAL CONFERENCE ON COMPUTING IN HIGH ENERGY AND NUCLEAR PHYSICS (CHEP 2019), 2020, 245
  • [4] Interactive Distributed Deep Learning with Jupyter Notebooks
    Farrell, Steve
    Vose, Aaron
    Evans, Oliver
    Henderson, Matthew
    Cholia, Shreyas
    Perez, Fernando
    Bhimji, Wahid
    Canon, Shane
    Thomas, Rollin
    Prabhat
    HIGH PERFORMANCE COMPUTING, ISC HIGH PERFORMANCE 2018, 2018, 11203 : 678 - 687
  • [5] NGLview-interactive molecular graphics for Jupyter notebooks
    Hai Nguyen
    Case, David A.
    Rose, Alexander S.
    BIOINFORMATICS, 2018, 34 (07) : 1241 - 1242
  • [6] Five Guiding Principles to Make Jupyter Notebooks Fit for Earth Observation Data Education
    Wagemann, Julia
    Fierli, Federico
    Mantovani, Simone
    Siemen, Stephan
    Seeger, Bernhard
    Bendix, Joerg
    REMOTE SENSING, 2022, 14 (14)
  • [7] Interactive demonstrations in acoustic signal processing using Jupyter notebooks
    Ali, Randall
    Van Waterschoot, Toon
    JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 2023, 153 (03):
  • [8] Static Analysis of Data Transformations in Jupyter Notebooks
    Negrini, Luca
    Shabadi, Guruprerana
    Urban, Caterina
    PROCEEDINGS OF THE 12TH ACM SIGPLAN INTERNATIONAL WORKSHOP ON THE STATE OF THE ART IN PROGRAM ANALYSIS, SOAP 2023, 2023, : 8 - 13
  • [9] Biotechnology Data Analysis Training with Jupyter Notebooks
    Liebal, Ulf W.
    Schimassek, Rafael
    Broderius, Iris
    Maassen, Nicole
    Vogelgesang, Alina
    Weyers, Philipp
    Blank, Lars M.
    JOURNAL OF MICROBIOLOGY & BIOLOGY EDUCATION, 2023, 24 (01)
  • [10] Lexcube: Interactive Visualization of Large Earth System Data Cubes
    Soechting, Maximilian
    Mahecha, Miguel D.
    Montero, David
    Scheuermann, Gerik
    IEEE COMPUTER GRAPHICS AND APPLICATIONS, 2024, 44 (01) : 25 - 37