Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America

被引:0
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作者
Perrier, Charles [1 ]
Allio, Remi [1 ]
Legeai, Fabrice [2 ,3 ,4 ]
Gautier, Mathieu [1 ]
Beneluz, Frederic
Marande, William [5 ]
Theron, Anthony [5 ]
Rodde, Nathalie [5 ]
Herrera, Melfran [6 ]
Saune, Laure
Parrinello, Hugues [7 ]
Mcclure, Melanie [8 ]
Arias, Monica [9 ,10 ]
机构
[1] Univ Montpellier, Inst Agro, CIRAD, UMR CBGP,INRAE,IRD, F-34398 Montpellier, France
[2] Univ Rennes, Inst Agro, INRAE, IGEPP, Rennes, France
[3] Univ Rennes, Inria, CNRS, IRISA, F-35000 Rennes, France
[4] Soc Entomol Antilles Guyane SEAG, F-34160 Montaud, France
[5] French Plant Genom Resource Ctr, INRAE CNRGV, Castanet Tolosan, France
[6] FUNDASALUD, Coordinac Vigilancia Epidemiol Ambiental, Direcc Estadal Salud Ambiental, Estado Sucre, Venezuela
[7] Univ Montpellier, MGX Montpellier GenomiX, CNRS, INSERM, Montpellier, France
[8] Univ Guyane, Lab Ecol Evolut Interact Syst Amazoniens LEEISA, Montpellier, France
[9] CIRAD, UMR PHIM, F-34398 Montpellier, France
[10] Univ Montpellier, Inst Agro, UMR PHIM, CIRAD, Montpellier, France
关键词
ashen moth; lepidopterism; population outbreaks; repetitive elements; yellowtail moth; COMPLETENESS; ANNOTATION; ALIGNMENT; STATE; TOOL;
D O I
10.1093/jhered/esae069
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present the first nuclear genome assembly and a complete mitogenome for Hylesia metabus (Arthropoda; Insecta; Lepidoptera; Saturniidae). The assembled nuclear genome sequence is 1,271 Mb long, which is among the 10 largest lepidopteran genome assemblies published to date. It is scaffolded in 31 pseudo chromosomes, has a BUSCO score of 99.5%, and has a highly conserved synteny compared with phylogenetically close species. Repetitive elements make up 67% of the nuclear genome and are mainly located in intergenic regions, among which LINEs were predominant, with CR1-Zenon being the most abundant. Phylogenetic and comparative analyses of H. metabus assembly and 17 additional Saturniidae and Sphingidae assemblies suggested that an accumulation of repetitive elements likely led to the increased size of H. metabus' genome. Gene annotation using Helixer identified 26,122 transcripts. The Z scaffold was identified using both a synteny analysis and variations of coverage for two resequenced male and female H. metabus. The H. metabus nuclear genome and mitogenome assemblies can be found and browsed on the BIPAA website and constitute useful resources for future population and comparative genomics studies.
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页数:10
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