The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity

被引:6
|
作者
Cerezo, Maria [1 ]
Sollis, Elliot [1 ]
Ji, Yue [1 ]
Lewis, Elizabeth [1 ]
Abid, Ala [1 ]
Bircan, Karatug Ozan [1 ]
Hall, Peggy [2 ]
Hayhurst, James [3 ]
John, Sajo [1 ]
Mosaku, Abayomi [1 ]
Ramachandran, Santhi [1 ]
Foreman, Amy [1 ]
Ibrahim, Arwa [1 ]
McLaughlin, James [1 ]
Pendlington, Zoe [1 ]
Stefancsik, Ray [1 ]
Lambert, Samuel A. [1 ,4 ,5 ,6 ,7 ,8 ]
McMahon, Aoife [1 ]
Morales, Joannella [2 ]
Keane, Thomas [1 ]
Inouye, Michael [4 ,5 ,6 ,7 ,9 ,10 ]
Parkinson, Helen [1 ]
Harris, Laura W. [1 ]
机构
[1] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England
[2] NHGRI, Div Genom Med, NIH, Bethesda, MD 20892 USA
[3] Open Targets, Wellcome Genome Campus, Cambridge CB10 1SD, England
[4] Univ Cambridge, British Heart Fdn Cardiovasc Epidemiol Unit, Dept Publ Hlth & Primary Care, Cambridge, England
[5] Univ Cambridge, Victor Phillip Dahdaleh Heart & Lung Res Inst, Cambridge, England
[6] Hlth Data Res UK Cambridge, Wellcome Genome Campus, Cambridge, England
[7] Univ Cambridge, Cambridge, England
[8] Univ Cambridge, Dept Publ Hlth & Primary Care, Cambridge Baker Syst Genom Initiat, Cambridge, England
[9] Univ Cambridge, British Heart Fdn Ctr Res Excellence, Cambridge, England
[10] Baker Heart & Diabet Inst, Cambridge Baker Syst Genom Initiat, 75 Commercial Rd, Melbourne, Vic 3004, Australia
关键词
ASSOCIATION;
D O I
10.1093/nar/gkae1070
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The NHGRI-EBI GWAS Catalog serves as a vital resource for the genetic research community, providing access to the most comprehensive database of human GWAS results. Currently, it contains close to 7 0 0 0 publications for > 15 0 0 0 traits, from which more than 625 0 0 0 lead associations have been curated. Additionally, 85 0 0 0 full genome-wide summary statistics datasets-containing association data for all variants in the analysis-are available for downstream analyses such as meta-analysis, fine-mapping , Mendelian randomisation or development of poly- genic risk scores. As a centralised repository for GWAS results, the GWAS Catalog sets and implements standards for data submission and harmonisation, and encourages the use of consistent descriptors for traits, samples and methodologies. We share processes and vocabulary with the PGS Catalog, improving interoperability for a growing user group. Here, we describe the latest changes in data content, improvements in our user interface, and the implementation of the GWAS-SSF standard format for summary statistics. We address the challenges of handling the rapid increase in large-scale molecular quantitative trait GWAS and the need for sensitivity in the use of population and cohort descriptors while maintaining data interoperability and reusability. [GRAPHICS] .
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页数:8
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