A high-quality chromosome-level genome assembly of Antiaris toxicaria

被引:0
|
作者
Huang, Weicheng [1 ]
Xiang, Jiaxin [2 ]
Ding, Yamei [1 ,3 ]
Liu, Wanzhen [1 ,3 ]
Fang, Ni [1 ]
Xiong, Yongmei [4 ]
Dai, Seping [4 ]
Yu, Hui [1 ,3 ,5 ]
机构
[1] Chinese Acad Sci, Key Lab Natl Forestry & Grassland Adm Plant Conser, South China Bot Garden, Guangzhou 510650, Peoples R China
[2] Hong Kong Baptist Univ, Dept Comp Sci, Kowloon, Hong Kong 999077, Peoples R China
[3] Chinese Acad Sci, Guangdong Prov Key Lab Appl Bot, Guangzhou 510650, Peoples R China
[4] Guangzhou Inst Forestry & Landscape Architecture, Guangzhou 510405, Peoples R China
[5] Chinese Acad Sci, State Key Lab Plant Divers & Specialty Crops, South China Bot Garden, Guangzhou 510650, Guangdong, Peoples R China
来源
BMC GENOMIC DATA | 2025年 / 26卷 / 01期
关键词
Antiaris toxicaria; Genome assembly; HiFi; ONT ultralong; Hi-C; Transcriptome; CARDIAC-GLYCOSIDES; LATEX;
D O I
10.1186/s12863-025-01309-2
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
ObjectivesAntiaris toxicaria is a tall tree belonging to the Moraceae family, known for its medicinal value. Its latex contains various cardiac glycosides, which hold significant research and potential application value. However, the lack of genomic resources for A. toxicaria currently hinders molecular genetic studies on its medicinal components. For its effective conservation and elucidation of the distinctive genetic traits of and medical components, we present its chromosome-level genome assembly.Data descriptionHere, we assembled two haplotypes of A. toxicaria, including a 671.73-Mb HapA subgenome containing 27,213 genes and a 666.41-Mb HapB subgenome containing 28,840 genes. Their contig N50 sizes were 90.18 and 90.29 Mb, respectively. The transposable elements represented 61.15% and 64.13% of the total assembled genome in HapA and HapB subgenome, respectively. A total of 27,213 and 28,840 genes were predicted in the two haplotypes. Hopefully, this chromosome-level genome of A. toxicaria will provide a valuable resource to enhance understanding of the biosynthesis of medicinal compounds.
引用
收藏
页数:5
相关论文
共 50 条
  • [1] A high-quality chromosome-level genome assembly of Ficus hirta
    Huang, Weicheng
    Ding, Yamei
    Fan, Songle
    Liu, Wanzhen
    Chen, Hongfeng
    Segar, Simon
    Compton, Stephen G.
    Yu, Hui
    SCIENTIFIC DATA, 2024, 11 (01)
  • [2] High-quality chromosome-level genome assembly of Nicotiana benthamiana
    Ko, Seo-Rin
    Lee, Sanghee
    Koo, Hyunjin
    Seo, Hyojeong
    Yu, Jaewoong
    Kim, Yong-Min
    Kwon, Suk-Yoon
    Shin, Ah-Young
    SCIENTIFIC DATA, 2024, 11 (01)
  • [3] The high-quality chromosome-level genome assembly of Dracocephalum rupestre Hance
    Zhao, Qian
    Fan, Zixu
    Yu, Hui
    Wang, Zhanli
    SCIENTIFIC DATA, 2025, 12 (01)
  • [4] High-quality chromosome-level genome assembly of Tibetan fox(Vulpes ferrilata)
    Tian-Shu Lyu
    Qin-Guo Wei
    Li-Dong Wang
    Sheng-Yang Zhou
    Lu-Peng Shi
    Yue-Huan Dong
    Hua-Shan Dou
    Wei-Lai Sha
    Ta Ga
    Hong-Hai Zhang
    Zoological Research, 2022, 43 (03) : 362 - 366
  • [5] High-quality chromosome-level genome assembly of redlip mullet (Planiliza haematocheila)
    Zhao, Na
    Guo, Hao-Bing
    Jia, Lei
    Deng, Qiu-Xia
    Zhu, Chun-Hua
    Zhang, Bo
    ZOOLOGICAL RESEARCH, 2021, 42 (06) : 796 - 799
  • [6] High-quality chromosome-level genome assembly of the whitespotted conger (Conger myriaster)
    Shenglei Han
    Chen Li
    Shuo Li
    Yan Chen
    Chenggang Wang
    Kaiqiang Liu
    Yuyan Liu
    Hong-Yan Wang
    Qian Wang
    Xuwen Cao
    Bao Shi
    Changwei Shao
    Scientific Data, 12 (1)
  • [7] A high-quality chromosome-level genome assembly of a generalist herbivore, Trichoplusia ni
    Chen, Wenbo
    Yang, Xiaowei
    Tetreau, Guillaume
    Song, Xiaozhao
    Coutu, Cathy
    Hegedus, Dwayne
    Blissard, Gary
    Fei, Zhangjun
    Wang, Ping
    MOLECULAR ECOLOGY RESOURCES, 2019, 19 (02) : 485 - 496
  • [8] High-quality chromosome-level genome assembly of Pacific cod, Gadus macrocephalus
    Ma, Yiqing
    Li, Yuan
    Jiang, Chen
    Zheng, Li
    Liu, Shenghao
    Zhao, Linlin
    FRONTIERS IN MARINE SCIENCE, 2022, 9
  • [9] A high-quality chromosome-level genome assembly of the bivalve mollusk Mactra veneriformis
    Sun, Yongxin
    Liu, Xiangfeng
    Xie, Xi
    Bai, Yongan
    Wang, Shuo
    Teng, Weiming
    Li, Dacheng
    Li, Hualin
    Yu, Zuoan
    Zhang, Ming
    Zhou, Zunchun
    Liu, Xu
    Nie, Hongtao
    Du, Shaojun
    Li, Xiaodong
    Li, Qi
    Wang, Qingzhi
    G3-GENES GENOMES GENETICS, 2022, 12 (11):
  • [10] A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis
    Shi, Chen-Yu
    Qin, Guo-Le
    Qin, Ying-Can
    Lu, Lin-Yuan
    Guan, De-Long
    Gao, Li-Xia
    SCIENTIFIC DATA, 2024, 11 (01)