Microplastics (MPs), the plastic debris smaller than 5 mm, are ubiquitous in waterbodies and have been shown to be toxic to aquatic organisms, especially to microalgae. The aim of this study is to use machine learning models to predict the effects of MPs on algal growth and to evaluate the relative importance of different features (MP properties, algal characteristics, and experimental conditions) through model interpretability analysis. Based on literature search, 408 samples were collected as inputs for the models. Three integrated machine learning algorithms, Random Forest (RF), Categorical Boosting (CatBoost), and Light Gradient Boosting Machine (LightGBM), were used to construct classification prediction models for algal growth. Our results show that the LightGBM model yields the best performance, with a total accuracy rate of 0.8305 and a Kappa value of 0.7165. The model interpretability analysis indicates that Exposure time, MP concentrations, and MP size are the most influential features affecting algal growth. For Exposure time, which belongs to experimental conditions, 72–216 h of MP exposure was found to exert the greatest effects on algal growth. The impact of MPs on algal growth increases with increasing MP concentrations over the range of 0 to 300 mg/L. Smaller MPs exert more effects on algal growth, and MPs are more likely to inhibit algal growth when the ratio of algal cell size to MP size is higher. Our study successfully established prediction models for evaluating the effects of various MP properties on algal growth. This study also provides insights into the prediction of MP toxicity in organisms. © 2024 Elsevier B.V.