Viral quasispecies spectrum reconstruction via coloring the vertex in the weighted read conflict graph

被引：0
|
作者：
Wu, Jingli [1 ,2 ]
Huang, Dan [2 ]
Wang, Jinyan [1 ,2 ]
Liao, Yuanxiu [2 ]
Lu, Jianbo [3 ]
机构：
[1] Guangxi Key Lab of Multi-source Information Mining and Security, Guangxi Normal University, Guilin, China
[2] College of Computer Science and Information Technology, Guangxi Normal University, Guilin, China
[3] School of Computer and Information Engineering, Guangxi Teachers Education University, Nanning, China
来源：
Lecture Notes in Electrical Engineering | 2019年 / 536卷
基金：
中国国家自然科学基金;
关键词：
Color coding - Fuzzy distance - Haplotypes - Read - Viral quasispecies - Weighted graph;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：1 / 15
相关论文
共 13 条
  • [1] Quasispecies Reconstruction Based on Vertex Coloring Algorithms
    Bu, Diyue
    Tang, Haixu
    [J]. 2014 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2014,
  • [2] Viral quasispecies reconstruction via tensor factorization with successive read removal
    Ahn, Soyeon
    Ke, Ziqi
    Vikalo, Haris
    [J]. BIOINFORMATICS, 2018, 34 (13) : 23 - 31
  • [3] Read length versus Depth of Coverage for Viral Quasispecies Reconstruction
    Zagordi, Osvaldo
    Daeumer, Martin
    Beisel, Christian
    Beerenwinkel, Niko
    [J]. PLOS ONE, 2012, 7 (10):
  • [4] On Properly Ordered Coloring of Vertices in a Vertex-Weighted Graph
    Fujita, Shinya
    Kitaev, Sergey
    Sato, Shizuka
    Tong, Li-Da
    [J]. ORDER-A JOURNAL ON THE THEORY OF ORDERED SETS AND ITS APPLICATIONS, 2021, 38 (03): : 515 - 525
  • [5] On Properly Ordered Coloring of Vertices in a Vertex-Weighted Graph
    Shinya Fujita
    Sergey Kitaev
    Shizuka Sato
    Li-Da Tong
    [J]. Order, 2021, 38 : 515 - 525
  • [6] VIRAL QUASISPECIES RECONSTRUCTION VIA TENSOR FACTORIZATION
    Ahn, Soyeon
    Ke, Ziqi
    Vikalo, Haris
    [J]. 2017 55TH ANNUAL ALLERTON CONFERENCE ON COMMUNICATION, CONTROL, AND COMPUTING (ALLERTON), 2017, : 1236 - 1239
  • [7] QSdpR: Viral quasispecies reconstruction via correlation clustering
    Barik, Somsubhra
    Das, Shreepriya
    Vikalo, Haris
    [J]. GENOMICS, 2018, 110 (06) : 375 - 381
  • [8] Exact weighted vertex coloring via branch-and-price
    Furini, Fabio
    Malaguti, Enrico
    [J]. DISCRETE OPTIMIZATION, 2012, 9 (02) : 130 - 136
  • [9] A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction
    Ke, Ziqi
    Vikalo, Haris
    [J]. THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE, 2020, 34 : 719 - 726
  • [10] Efficient Solvability of the Weighted Vertex Coloring Problem for Some Two Hereditary Graph Classes
    Razvenskaya O.O.
    Malyshev D.S.
    [J]. Journal of Applied and Industrial Mathematics, 2021, 15 (01) : 97 - 117
12