Molecular Docking Study of the Potential Relevanc of the Natural Compounds Isoflavone and Myriceti to COVID-19

被引:2
|
作者
Priyandoko, Didik [1 ]
Widowati, Wahyu [2 ]
Subangkit, Mawar [3 ]
Jasaputra, Diana Krisanti [2 ]
Wargasetia, Teresa Liliana [2 ]
Sholihah, Ika Adhani [4 ,5 ]
Aviani, Jenifer Kiem [5 ]
机构
[1] Biology Study Program, Indonesia University of Education, 229 Dr. SetiabudiIsola, Kec. Sukasari, Bandung,40154, Indonesia
[2] Faculty of Medicine, Maranatha Christian University 65 Jl Prof. drg. Surya Sumantri, Bandung,40164, Indonesia
[3] Laboratory of Veterinary Pathology, Faculty of Veterinary Medicine Institute of Pertanian, Jl. Raya Dramaga Kampus IPB, Dramaga, Bogor,16680, Indonesia
[4] School of Life Sciences and Technology, Institute of Technology, 10 Jl. Ganeca, Kec. Coblong, Bandung,40132, Indonesia
[5] Aretha Medika Utama, Biomolecular and Biomedical Research Center 9 Jl Babakan Jeruk 2, Bandung,40163, Indonesia
关键词
Disease control - Flavonoids - Molecular modeling - Proteins - Binding energy;
D O I
10.7546/ijba.2021.25.3.000796
中图分类号
学科分类号
摘要
The 2019 novel coronavirus (2019-nCoV) or severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread rapidly from its origin in Wuhan City, Hubei Province, China, to the rest of the world. The efficacy of herbal treatment in the control of contagious disease was demonstrated during the 2003 outbreak of severe acute respiratory syndrome (SARS). Natural compound used for this study were isoflavone and myricetin. Molecular docking was performed to analyze binding mode of the compounds towards 12 proteins related to COVID-19. The prediction shows that isoflavone and myricetin have moderate probability of antiviral activity. All of the docked compounds occupied the active sites of the proteins related to COVID-19. Based on QSAR and molecular docking, interactions were predicted with 10 out of 12 potential COVID-19 proteins for myricetin and with 9 out of 12 proteins interactions for isoflavone. A potential disease alleviating action is suggested for isoflavone and myricetin in the context of COVID-19 infection. © 2021. by the authors. All Rights Reserved.
引用
收藏
页码:271 / 282
相关论文
共 50 条
  • [1] DFT and Molecular docking study of natural molecules proposed for COVID-19 treatment
    El Hadki, H.
    El Hadki, A.
    Tazi, R.
    Komiha, N.
    Zrineh, A.
    El Hajjaji, S.
    Kabbaj, O. K.
    [J]. MOROCCAN JOURNAL OF CHEMISTRY, 2021, 9 (02): : 198 - 209
  • [2] Repurposing the natural compounds as potential therapeutic agents for COVID-19 based on the molecular docking study of the main protease and the receptor-binding domain of spike protein
    Eskandari, Vajiheh
    [J]. JOURNAL OF MOLECULAR MODELING, 2022, 28 (06)
  • [3] Repurposing the natural compounds as potential therapeutic agents for COVID-19 based on the molecular docking study of the main protease and the receptor-binding domain of spike protein
    Vajiheh Eskandari
    [J]. Journal of Molecular Modeling, 2022, 28
  • [4] Synthesis and molecular docking study of novel COVID-19 inhibitors
    Dercek, Zuhal
    Ceyhan, Deniz
    Ercag, Erol
    [J]. TURKISH JOURNAL OF CHEMISTRY, 2021, 45 (03) : 704 - 718
  • [5] MOLECULAR DOCKING STUDY REVEALS THE POTENTIAL REPURPOSING OF HISTONE DEACETYLASE INHIBITORS AGAINST COVID-19
    Mohamed, Mamdouh F. A.
    Abuo-Rahma, Gamal El-Din A.
    Hayallah, Alaa M.
    Aziz, Marwa A.
    Nafady, Ayman
    Samir, Ebtihal
    [J]. INTERNATIONAL JOURNAL OF PHARMACEUTICAL SCIENCES AND RESEARCH, 2020, 11 (09): : 4261 - 4270
  • [6] Molecular docking reveals the potential of Cleome amblyocarpa isolated compounds to inhibit COVID-19 virus main protease
    Zaki, Ahmed A.
    Al-Karmalawy, Ahmed A.
    El-Amier, Yasser A.
    Ashour, Ahmed
    [J]. NEW JOURNAL OF CHEMISTRY, 2020, 44 (39) : 16752 - 16758
  • [7] Screening of potential inhibitors of COVID-19 with repurposing approach via molecular docking
    Alizadehmohajer, Negin
    Behmardi, Abtin
    Najafgholian, Simin
    Moradi, Shabnam
    Mohammadi, Forogh
    Nedaeinia, Reza
    Haghjooy Javanmard, Shaghayegh
    Sohrabi, Ehsan
    Salehi, Rasoul
    Ferns, Gordon A.
    Emami Nejad, Asieh
    Manian, Mostafa
    [J]. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, 2022, 11 (01):
  • [8] Screening of potential inhibitors of COVID-19 with repurposing approach via molecular docking
    Negin Alizadehmohajer
    Abtin Behmardi
    Simin Najafgholian
    Shabnam Moradi
    Forogh Mohammadi
    Reza Nedaeinia
    Shaghayegh Haghjooy Javanmard
    Ehsan Sohrabi
    Rasoul Salehi
    Gordon A. Ferns
    Asieh Emami Nejad
    Mostafa Manian
    [J]. Network Modeling Analysis in Health Informatics and Bioinformatics, 2022, 11
  • [9] Molecular Docking of Natural Compounds for Potential Inhibition of AhR
    Giordano, Deborah
    Facchiano, Angelo
    Moccia, Stefania
    Meola, Anna Maria Iole
    Russo, Gian Luigi
    Spagnuolo, Carmela
    [J]. FOODS, 2023, 12 (10)
  • [10] In silica screening of natural compounds against COVID-19 by targeting Mpro and ACE2 using molecular docking
    Joshi, T.
    Joshi, T.
    Sharma, P.
    Mathpal, S.
    Pundir, H.
    Bhatt, V.
    Chandra, S.
    [J]. EUROPEAN REVIEW FOR MEDICAL AND PHARMACOLOGICAL SCIENCES, 2020, 24 (08) : 4529 - 4536