Classification of Cell Deformation Dynamics Based on Generative Adversarial Networks

被引:0
|
作者
Pang F.-Q. [1 ]
Liu Z.-W. [1 ]
Shi Y.-G. [1 ]
机构
[1] School of Information & Electronics, Beijing Institute of Technology, Beijing
来源
Beijing Ligong Daxue Xuebao/Transaction of Beijing Institute of Technology | 2019年 / 39卷
关键词
Auxiliary classifier GANs; Cell deformation; Cell temporal dynamics; Generative adversarial networks;
D O I
10.15918/j.tbit1001-0645.2019.s1.006
中图分类号
学科分类号
摘要
A generative adversarial networks (GANs) based model was proposed to classify cell deformation dynamics. In the framework, an auxiliary classifier GANs (AC-GANs) were introduced to simultaneously train GANs and a classification network for cell deformation dynamics in live-cell videos. The generated samples from GANs could further enhance the performance of the original classification network. To facilitate application of GANs, cell dynamic image was used to encapsulate the cell dynamics in videos along the temporal dimension, making the cell dynamics information mapped from video area to image area for the construction of the GANs. Then, the classification information was employed in AC-GANs to improve the generation of multi-class samples for GANs, and these multi-class samples could enhance the performance of classification net for improving the cell dynamic deformation. Experimental results demonstrate that the proposed pipeline can effectively capture the spatio-temporal cell dynamics from the raw live-cell videos and outperforms existing methods on the live-cell database. © 2019, Editorial Department of Transaction of Beijing Institute of Technology. All right reserved.
引用
收藏
页码:33 / 37
页数:4
相关论文
共 18 条
  • [1] Sirinukunwattana K., Khan A.M., Rajpoot N.M., Cell words: modelling the visual appearance of cells in histopathology images, Computerized Medical Imaging & Graphics, 42, pp. 16-24, (2015)
  • [2] Li Q., Wang Y., Liu H., Et al., Leukocyte cells identification and quantitative morphometry based on molecular hyperspectral imaging technology, Computerized Medical Imaging & Graphics, 38, 3, pp. 171-178, (2014)
  • [3] Wang K., Sun W., Richie C.T., Et al., Directwavefront sensing for high-resolution in vivo imaging in scattering tissue, Nature Communications, 6, pp. 72-76, (2015)
  • [4] Campana M., Sarti A., Cell morphodynamics visualization from images of zebrafish embryogenesis, Computerized Medical Imaging & Graphics, 34, 5, pp. 394-403, (2010)
  • [5] Parrilla E., Armengot M., Mata M., Et al., Primary ciliary dyskinesia assessment by means of optical flow analysis of phase-contrast microscopy images, Computerized Medical Imaging & Graphics, 38, 3, pp. 163-170, (2014)
  • [6] Alizadeh E., Lyons S.M., Castle J.M., Et al., Measuring systematic changes in invasive cancer cell shape using Zernike moments, Integrative Biology Quantitative Biosciences from Nano to Macro, 8, 11, (2016)
  • [7] An X., Liu Z., Shi Y., Et al., Modeling dynamic cellular morphology in images, Proceedings of International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 340-347, (2012)
  • [8] Tsygankov D., Bilancia C.G., Vitriol E.A., Et al., CellGeo: a computational platform for the analysis of shape changes in cells with complex geometries, Journal of Cell Biology, 204, 3, pp. 443-460, (2014)
  • [9] Pang F., Liu Z., Li H., Et al., The measurement of cell viability based on temporal bag of words for image sequences, Proceedings of IEEE International Conference on Image Processing, pp. 4185-4189, (2015)
  • [10] Huang Y., Liu Z., Shi Y., Et al., Quantitativeanalysis of lymphocytes morphology and motion in intravital microscopic images, Proceedings of Engineering in Medicine and Biology Society, pp. 3686-3689, (2013)