Whole Slide Image Quality in Digital Pathology: Review and Perspectives

被引:0
|
作者
Brixtel, Romain [1 ]
Bougleux, Sebastien [2 ]
Lezoray, Olivier [2 ]
Caillot, Yann [1 ]
Lemoine, Benoit [1 ]
Fontaine, Mathieu [1 ]
Nebati, Dalal [1 ]
Renouf, Arnaud [1 ]
机构
[1] Datexim, Caen,14000, France
[2] Unicaen, Ensicaen, Cnrs, Greyc, Normandie Université, Caen,14000, France
关键词
Computer aided analysis - Computer aided diagnosis - Image analysis - Image quality - Quality assurance - Quality control;
D O I
暂无
中图分类号
学科分类号
摘要
With the advent of whole slide image (WSI) scanners, pathology is undergoing a digital revolution. Simultaneously, with the development of image analysis algorithms based on artificial intelligence tools, the application of computerized WSI analysis can now be expected. However, transferring such tools into clinical practice is very challenging as they must deal with many artifacts that can occur during sample preparation and digitization. Therefore, the quality of WSIs is of prime importance, and we propose a review of the state-of-the-art of computational approaches for quality control. In particular, we focus on WSI quality issues related to the presence of sample preparation artifacts, compression artifacts, color variations, and out-of-focus areas. An analysis of the monthly WSI clinical routine in a cytological laboratory confirms the importance of implementing quality control measures. Given this observation, we draw perspectives on how a computational quality process can be included in a computational pathology diagnosis pipeline. © 2013 IEEE.
引用
收藏
页码:131005 / 131035
相关论文
共 50 条
  • [1] Whole Slide Image Quality in Digital Pathology: Review and Perspectives
    Brixtel, Romain
    Bougleux, Sebastien
    Lezoray, Olivier
    Caillot, Yann
    Lemoine, Benoit
    Fontaine, Mathieu
    Nebati, Dalal
    Renouf, Arnaud
    IEEE ACCESS, 2022, 10 : 131005 - 131035
  • [2] Image Quality Assessment in Digital Pathology - The Analysis of Background in Whole Slide Images
    Schrader, Thomas
    Nadolny, Anne
    Piduch, Robert
    Hufnagl, Peter
    PROCEEDINGS IWBBIO 2014: INTERNATIONAL WORK-CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING, VOLS 1 AND 2, 2014, : 147 - 147
  • [3] Multi-Stained Whole Slide Image Alignment in Digital Pathology
    Deniz, Oscar
    Toomey, David
    Conway, Catherine
    Bueno, Gloria
    MEDICAL IMAGING 2015: DIGITAL PATHOLOGY, 2015, 9420
  • [4] Privacy risks of whole-slide image sharing in digital pathology
    Petr Holub
    Heimo Müller
    Tomáš Bíl
    Luca Pireddu
    Markus Plass
    Fabian Prasser
    Irene Schlünder
    Kurt Zatloukal
    Rudolf Nenutil
    Tomáš Brázdil
    Nature Communications, 14
  • [5] Privacy risks of whole-slide image sharing in digital pathology
    Holub, Petr
    Mueller, Heimo
    Bil, Tomas
    Pireddu, Luca
    Plass, Markus
    Prasser, Fabian
    Schluender, Irene
    Zatloukal, Kurt
    Nenutil, Rudolf
    Brazdil, Tomas
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [6] Optical quality assessment of whole slide imaging systems for digital pathology
    Shakeri, S. Mojtaba
    Hulsken, Bas
    van Vliet, Lucas J.
    Stallinga, Sjoerd
    OPTICS EXPRESS, 2015, 23 (02): : 1319 - 1336
  • [7] Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis
    Sami Blom
    Lassi Paavolainen
    Dmitrii Bychkov
    Riku Turkki
    Petra Mäki-Teeri
    Annabrita Hemmes
    Katja Välimäki
    Johan Lundin
    Olli Kallioniemi
    Teijo Pellinen
    Scientific Reports, 7
  • [8] Digital pathology whole slide image compression with Vector Quantized Variational Autoencoders
    Keighley, Jason
    de Kamps, Marc
    Wright, Alexander
    Treanor, Darren
    MEDICAL IMAGING 2023, 2023, 12471
  • [9] Optimal whole slide image formats for artificial intelligence training in digital pathology
    Yook, M.
    Jung, C. K.
    Yoon, S. K.
    Choi, I. Y.
    VIRCHOWS ARCHIV, 2024, 485 : S400 - S400
  • [10] Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis
    Blom, Sami
    Paavolainen, Lassi
    Bychkov, Dmitrii
    Turkki, Riku
    Maki-Teeri, Petra
    Hemmes, Annabrita
    Valimaki, Katja
    Lundin, Johan
    Kallioniemi, Olli
    Pellinen, Teijo
    SCIENTIFIC REPORTS, 2017, 7