Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae)

被引:0
|
作者
Yan, Yulu [1 ]
Zhao, Ke [1 ]
Yang, Longwei [1 ]
Liu, Nan [1 ]
Xu, Yufei [1 ]
Gai, Junyi [1 ]
Xing, Guangnan [1 ]
机构
[1] Nanjing Agr Univ, Lab Biol & Genet Improvement Soybean, Jiangsu Collaborat Innovat Ctr Modern Crop Prod, Coll Agr,Minist Agr,Zhongshan Biol Breeding Lab ZS, Nanjing 210095, Peoples R China
基金
国家重点研发计划;
关键词
ALIGNMENTS;
D O I
10.1038/s41597-024-03853-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The soybean hawkmoth Clanis bilineata tsingtauica Mell (Lepidoptera, Sphingidae; CBT), as one of the main leaf-chewing pests of soybeans, has gained popularity as an edible insect in China recently due to its high nutritional value. However, high-quality genome of CBT remains unclear, which greatly limits further research. In the present study, we assembled a high-quality chromosome-level genome of CBT using PacBio HiFi reads and Hi-C technologies for the first time. The size of the assembled genome is 477.45 Mb with a contig N50 length of 17.43 Mb. After Hi-C scaffolding, the contigs were anchored to 29 chromosomes with a mapping rate of 99.61%. Benchmarking Universal Single-Copy Orthologues (BUSCO) completeness value is 99.49%. The genome contains 252.16 Mb of repeat elements and 14,214 protein-coding genes. In addition, chromosomal synteny analysis showed that the genome of CBT has a strong synteny with that of Manduca sexta. In conclusion, this high-quality genome provides an important resource for future studies of CBT and contributes to the development of integrated pest management strategies.
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页数:9
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