In-vitro enzyme inhibition, kinetics, molecular docking and dynamics simulation approaches to decoding the mechanism of Ficus virens in cholinesterase inhibition

被引:0
|
作者
Albadrani, Hind Muteb [1 ]
Alsaweed, Mohammed [2 ]
Jamal, Qazi Mohammad Sajid [3 ]
Alasiry, Sharifa M. [4 ]
Jahan, Sadaf [2 ]
Hamed, Munerah [5 ]
Kamal, Mehnaz [6 ]
Rehman, Md Tabish [7 ]
Iqbal, Danish [8 ]
机构
[1] Imam Abdulrahman Bin Faisal Univ, Coll Appl Med Sci, Dept Clin Lab Sci, Dammam, Saudi Arabia
[2] Majmaah Univ, Coll Appl Med Sci, Dept Med Lab Sci, Majmaah, Saudi Arabia
[3] Qassim Univ, Coll Appl Med Sci, Dept Hlth Informat, Buraydah, Saudi Arabia
[4] Majmaah Univ, Coll Appl Med Sci, Dept Nursing, Al Majmaah, 11952, Saudi Arabia
[5] Umm Al Qura Univ, Fac Med, Dept Pathol, Mecca, Saudi Arabia
[6] Prince Sattam Bin Abdulaziz Univ, Coll Pharm, Dept Pharmaceut Chem, Al Kharj, Saudi Arabia
[7] King Saud Univ, Coll Pharm, Dept Pharmacognosy, Riyadh, Saudi Arabia
[8] Coll Appl Med Sci, Dept Hlth Informat Management, Buraydah Private Coll, Buraydah, Saudi Arabia
来源
关键词
Ficus virens; Alzheimer's disease; acetylcholinesterase; butyrylcholinesterase; enzyme kinetics; molecular dynamics simulation; ESTIMATE SOLUBILITY; DRUG DISCOVERY; BUTYRYLCHOLINESTERASE; ACETYLCHOLINESTERASE; PERMEABILITY;
D O I
10.1080/16583655.2024.2403813
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the current study, we investigate the bioactive potentials and mode of action of Ficus virens bark (FVB) extract against cholinesterase enzymes, via in-vitro cell-free cholinesterase inhibition kinetics, molecular docking, ADMET and dynamic simulation. Our results illustrated that FVBM extract showed better DPPH-free radical scavenging activity (IC50 = 17.8 +/- 0.46 mu g/ml) and AChE inhibitory ability (IC50 = 37.2 +/- 0.43 mu g/ml). Kinetics study explored the mixed inhibition of AChE enzyme by FVBM extract. Furthermore, molecular docking demonstrates that compounds Diethyl Phthalate and Dinopol NOP present in FVBM extract have good Delta G: -8.6 kcal/mol and Ki; 2.01 x 106 M-1 for AChE enzyme than BuChE enzyme (Delta G: -7.6 and Ki: 3.72 x 105 M-1). A simulation study of 200 ns of best two hits and Tacrine confirms that these compounds remained inside the binding pocket of proteins and formed a stable protein-ligand complex via interacting with key residue. Further studies could provide a better understanding of the therapeutic potential of these promising compounds.
引用
收藏
页数:17
相关论文
共 50 条
  • [1] Inhibition mechanism of theaflavins on matrix metalloproteinase-2: inhibition kinetics, multispectral analysis, molecular docking and molecular dynamics simulation
    Guo, Jing
    Hu, Mengna
    Yang, Mingqi
    Cao, Huang
    Li, Hongan
    Zhu, Jiayu
    Li, Shuang
    Zhang, Jinsheng
    FOOD & FUNCTION, 2024, 15 (14) : 7452 - 7467
  • [2] Exploring the Binding Pattern of Geraniol with Acetylcholinesterase through In Silico Docking, Molecular Dynamics Simulation, and In Vitro Enzyme Inhibition Kinetics Studies
    Iqbal, Danish
    Khan, M. Salman
    Waiz, Mohd
    Rehman, Md Tabish
    Alaidarous, Mohammed
    Jamal, Azfar
    Alothaim, Abdulaziz S.
    AlAjmi, Mohamed F.
    Alshehri, Bader Mohammed
    Banawas, Saeed
    Alsaweed, Mohammed
    Madkhali, Yahya
    Algarni, Abdulrahman
    Alsagaby, Suliman A.
    Alturaiki, Wael
    CELLS, 2021, 10 (12)
  • [3] Molecular docking and molecular dynamics simulation decoding molecular mechanism of EDCs binding to hERRγ
    Sun, Ying
    Chen, Lin
    Zhao, Bing
    Wang, Ruige
    JOURNAL OF MOLECULAR MODELING, 2024, 30 (05)
  • [4] Inhibition of α-glucosidase by trilobatin and its mechanism: kinetics, interaction mechanism and molecular docking
    He, Ming
    Zhai, Yuhan
    Zhang, Yuqing
    Xu, Shuo
    Yu, Shaoxuan
    Wei, Yingxin
    Xiao, Haifang
    Song, Yuanda
    FOOD & FUNCTION, 2022, 13 (02) : 857 - 866
  • [5] Ocotea daphnifolia: phytochemical investigation, in vitro dual cholinesterase inhibition, and molecular docking studies
    Marchesine de Almeida, Raquel Bianca
    Conceicao, Rodrigo Souza
    da Silva, Kryzia Santana
    dos Santos Junior, Manoelito Coelho
    Branco, Alexsandro
    Botura, Mariana Borges
    BRAZILIAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2021, 57
  • [6] Inhibition mechanism of buckwheat hulls polyphenols on α-amylase and α-glucosidase using kinetics, spectroscopics and molecular docking approaches
    Xu, Caihong
    He, Min
    Jiang, Zhongli
    Yang, Qingyu
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 280
  • [7] Identification, In Vitro Testing and Molecular Docking Studies of Microginins' Mechanism of Angiotensin-Converting Enzyme Inhibition
    Paiva, Fernanda C. R.
    Ferreira, Glaucio Monteiro
    Trossini, Gustavo H. G.
    Pinto, Ernani
    MOLECULES, 2017, 22 (12):
  • [9] Molecular dynamics simulation on mechanism of scale inhibition of polymer
    Wang, Shi-Yan
    Zhang, Jun
    Lu, Gui-Wu
    Zhongguo Shiyou Daxue Xuebao (Ziran Kexue Ban)/Journal of China University of Petroleum (Edition of Natural Science), 2007, 31 (05): : 144 - 147
  • [10] New tetrahydro-isoquinoline derivatives as cholinesterase and α-glycosidase inhibitors: Synthesis, characterization, molecular docking & dynamics, ADME prediction, in vitro cytotoxicity and enzyme inhibition studies
    Mamedov, Ibrahim
    Senol, Halil
    Naghiyev, Farid
    Khrustalev, Victor
    Sadeghian, Nastaran
    Taslimi, Parham
    JOURNAL OF MOLECULAR LIQUIDS, 2024, 404