Bioinformatics analysis of potential ferroptosis and non-alcoholic fatty liver disease biomarkers

被引:0
|
作者
Yu, Xiaoxiao [1 ]
Yang, Kai [1 ]
Fang, Zhihao [1 ]
Liu, Changxu [1 ]
Hui, Titi [1 ]
Guo, Zihao [1 ]
Dong, Zhichao [1 ]
Liu, Chang [1 ]
机构
[1] Harbin Med Univ, Affiliated Hosp 4, Dept Gen Surg, 37 Yiyuan St, Harbin 150001, Heilongjiang, Peoples R China
关键词
Bioinformatics analysis; Non-alcoholic fatty liver disease; Ferroptosis; Biomarkers; PATHOGENESIS; EXPRESSION; PACKAGE;
D O I
10.4149/gpb_2024017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ferroptosis plays a crucial role in the development of non-alcoholic fatty liver disease (NAFLD). In this study, we aimed to use a comprehensive bioinformatics approach and experimental validation to identify and verify potential ferroptosis-related genes in NAFLD. We downloaded the microarray datasets for screening differentially expressed genes (DEGs) and identified the intersection of these datasets with ferroptosis-related DEGs from the Ferroptosis database. Subsequently, ferroptosis-related DEGs were obtained using SVM analysis; the LASSO algorithm was then used to identify six marker genes. Furthermore, the CIBERSORT algorithm was used to estimate the proportion of different types of immune cells. Subsequently, we constructed drug regulatory networks and ceRNA regulatory networks. We identified six genes as marker genes for NAFLD, demonstrating their robust diagnostic abilities. Subsequent functional enrichment analysis results revealed that these marker genes were associated with multiple diseases and play a key role in NAFLD via the regulation of immune response and amino acid metabolism, among other pathways. The expression of hepatic EGR1, IL-6, SOCS1, and NR4A1 was significantly downregulated in the NAFLD model. Our findings provide new insights and molecular clues for understanding and treating NAFLD. Further studies are needed to assess the diagnostic potential of these markers for NAFLD.
引用
收藏
页数:38
相关论文
共 50 条
  • [1] An overview of ferroptosis in non-alcoholic fatty liver disease
    Wang, Shendong
    Liu, Zhaojun
    Geng, Jiafeng
    Li, Liangge
    Feng, Xiujing
    [J]. BIOMEDICINE & PHARMACOTHERAPY, 2022, 153
  • [2] Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease
    Huan Zhang
    Malina Axinbai
    Yuqing Zhao
    Jiaoyang Wei
    Tongshuo Qu
    Jingmin Kong
    Yongqiang He
    Liping Zhang
    [J]. European Journal of Medical Research, 28
  • [3] Bioinformatics analysis of ferroptosis-related genes and immune cell infiltration in non-alcoholic fatty liver disease
    Zhang, Huan
    Axinbai, Malina
    Zhao, Yuqing
    Wei, Jiaoyang
    Qu, Tongshuo
    Kong, Jingmin
    He, Yongqiang
    Zhang, Liping
    [J]. EUROPEAN JOURNAL OF MEDICAL RESEARCH, 2023, 28 (01)
  • [4] The Metabolomics of Non-Alcoholic Fatty Liver Disease: Of Networks and Biomarkers
    McGlinchey, Aidan
    Geng, Dawei
    Govaere, Olivier
    Ratziu, Vlad
    Bugianesi, Elisabetta
    Schattenberg, Joern M.
    Daley, Ann
    Hyotylainen, Tuulia
    Anstee, Quentin
    Oresic, Matej
    [J]. JOURNAL OF HEPATOLOGY, 2021, 75 : S579 - S580
  • [5] Metabolomic Biomarkers in the Diagnosis of Non-Alcoholic Fatty Liver Disease
    Chashmniam, Saeed
    Ghafourpour, Mohsen
    Farimani, Azam Rezaei
    Gholami, Ali
    Ghoochani, Bibi Fatemeh Nobakht Motlagh
    [J]. HEPATITIS MONTHLY, 2019, 19 (09)
  • [6] Circulating microRNAs as Potential Biomarkers in Non-Alcoholic Fatty Liver Disease and Hepatocellular Carcinoma
    Afonso, Marta B.
    Rodrigues, Pedro M.
    Simao, Andre L.
    Castro, Rui E.
    [J]. JOURNAL OF CLINICAL MEDICINE, 2016, 5 (03)
  • [7] Plasma proteome profiling discovers potential biomarkers of non-alcoholic fatty liver disease
    Niu, Lili
    Gupta, Rajat
    Geyer, Philipp E.
    Albrechtsen, Nicolai J. W.
    Gluud, Lise L.
    Santos, Alberto
    Doll, Sophia
    Holst, Jens J.
    Knop, Filip K.
    Vilsboll, Tina
    Junker, Anders
    Sachs, Stephan
    Stemmer, Kerstin
    Mueller, Timo D.
    Tschoep, Matthias H.
    Hofmann, Susanna M.
    Mann, Matthias
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2019, 18 (08) : S71 - S71
  • [8] Discovering biomarkers for non-alcoholic fatty liver
    Amri, J.
    Alaee, M.
    Salehi, M.
    [J]. CLINICA CHIMICA ACTA, 2024, 558 : 10 - 10
  • [9] Identification of biomarkers for the diagnosis of chronic kidney disease (CKD) with non-alcoholic fatty liver disease (NAFLD) by bioinformatics analysis and machine learning
    Cao, Yang
    Du, Yiwei
    Jia, Weili
    Ding, Jian
    Yuan, Juzheng
    Zhang, Hong
    Zhang, Xuan
    Tao, Kaishan
    Yang, Zhaoxu
    [J]. FRONTIERS IN ENDOCRINOLOGY, 2023, 14
  • [10] Non-invasive biomarkers of liver fibrosis in non-alcoholic fatty liver disease
    Basheer, Maamon
    Naffaa, Mohamed
    Assy, Nimer
    [J]. CLINICAL AND MOLECULAR HEPATOLOGY, 2023, 29 (02) : 398 - 400