Inhibitory efficiency of quinazoline derivatives against SARS-CoV-2: virtual screening and molecular dynamics study

被引:0
|
作者
Reza, Rahimasoom [1 ]
Dutta, Tanmoy [2 ]
Ghosh, Narendra Nath [3 ]
Baildya, Nabajyoti [4 ]
Das, Rajesh Kumar [1 ]
Khan, Abdul Ashik [5 ]
机构
[1] Univ North Bengal, Dept Chem, Darjeeling 734013, India
[2] JIS Coll Engn, Dept Chem, Kalyani 741235, India
[3] Univ Gour Banga, Dept Chem, Mokdumpur 732103, Malda, India
[4] Univ Kalyani, Dept Chem, Kalyani 741235, India
[5] Darjeeling Govt Coll, Dept Chem, Darjeeling 734101, India
关键词
SARS-CoV-2; Molecular dynamics simulation; Mpro; PLpro; RdRp; Spike protein; ANTIVIRAL ACTIVITY; DESIGN; GROMACS; MODEL;
D O I
10.1007/s43538-024-00331-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
After spreading worldwide, SARS-CoV-2 became a big threat to human civilization as no effective treatment is available till now. People are suffering from this COVID 19 pandemic even after the development of the vaccine which demands the development of antiviral drugs against this deadly virus. In this research, 17 biologically active quinazoline derivatives are virtually screened with the Mpro, PLpro, RdRp, and Spike proteins of SARS-CoV-2. ADMET, toxicity, and drug-likeness properties of these compounds are also checked. MD-simulation studies were performed with the most effective compound (Q_16) of the selected derivatives against SARS-CoV-2 as suggested by the molecular docking study. RMSD, RMSF, radius of gyration and solvent accessible surface area analysis also confirmed the effective binding of this compound with selected SARS-CoV-2 proteins. We believe that the inhibitory efficiency of this quinazoline derivative will help to develop the therapeutic treatment against SARS-CoV-2.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Inhibitory efficiency of potential drugs against SARS-CoV-2 by blocking human angiotensin converting enzyme-2: Virtual screening and molecular dynamics study
    Khan, Abdul Ashik
    Baildya, Nabajyoti
    Dutta, Tanmoy
    Ghosh, Narendra Nath
    MICROBIAL PATHOGENESIS, 2021, 152
  • [2] Inhibitory Activity of Balanites aegyptiaca Phytochemicals on Main Protease of SARS-CoV-2: Virtual Screening and Molecular Dynamics Simulation
    Abu Zeid, Isam
    INTERNATIONAL JOURNAL OF PHARMACOLOGY, 2021, 17 (07) : 482 - 490
  • [3] In Silico Virtual Screening of Marine Aldehyde Derivatives from Seaweeds against SARS-CoV-2
    Kang, Nalae
    Heo, Seong-Yeong
    Cha, Seon-Heui
    Ahn, Ginnae
    Heo, Soo-Jin
    MARINE DRUGS, 2022, 20 (06)
  • [4] Predictive modeling by deep learning, virtual screening and molecular dynamics study of natural compounds against SARS-CoV-2 main protease
    Joshi, Tanuja
    Joshi, Tushar
    Pundir, Hemlata
    Sharma, Priyanka
    Mathpal, Shalini
    Chandra, Subhash
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (17): : 6728 - 6746
  • [5] Inhibitory activity of marine sponge metabolites on SARS-CoV-2 RNA dependent polymerase: virtual screening and molecular dynamics simulation
    Ali, Hani S. H. Mohammed
    Altayb, Hisham N.
    Firoz, Ahmad
    Bayoumi, Ahmed Atef Mohamed
    El Omri, Abdelfatteh
    Chaieb, Kamel
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (20): : 10191 - 10202
  • [6] Virtual screening and molecular docking study of some naturally available phyto chemicals against SARS-CoV-2
    Dey, Avishek
    Ahmad, Iqrar
    Mondal, Keshab
    Jana, Rathin
    Patel, Harun
    Mistri, Soumen
    INDIAN JOURNAL OF CHEMISTRY, 2023, 62 (12): : 1252 - 1267
  • [7] The Inhibitory Potential of Ferulic Acid Derivatives against the SARS-CoV-2 Main Protease: Molecular Docking, Molecular Dynamics, and ADMET Evaluation
    Antonopoulou, Io
    Sapountzaki, Eleftheria
    Rova, Ulrika
    Christakopoulos, Paul
    BIOMEDICINES, 2022, 10 (08)
  • [8] Pharmacological Potential of Pyrmidine Derivatives: A Review With Emphasis on Antiviral Effects and Virtual Screening Against Sars-Cov-2 Molecular Targets
    Costa, Erick Caique Santos
    Monte, Zenaide S.
    Falcao, Emerson P. S.
    Maia, Mayara dos Santos
    de Menezes, Renata Priscila Barros
    Scotti, Luciana
    Scotti, Marcus Tullius
    de Melo, Sebastiao Jose
    CHEMISTRYSELECT, 2023, 8 (23):
  • [9] Virtual Screening and Molecular Design of Potential SARS-COV-2 Inhibitors
    Tinkov, O., V
    Grigorev, V. Yu
    Grigoreva, L. D.
    MOSCOW UNIVERSITY CHEMISTRY BULLETIN, 2021, 76 (02) : 95 - 113
  • [10] Virtual Screening and Molecular Design of Potential SARS-COV-2 Inhibitors
    O. V. Tinkov
    V. Yu. Grigorev
    L. D. Grigoreva
    Moscow University Chemistry Bulletin, 2021, 76 : 95 - 113