Whole genome sequences of 135 "Candidatus Liberibacter asiaticus" strains from China

被引：1
|
作者：
Zheng, Yongqin [1 ,2 ]
Li, Jiaming [1 ,2 ]
Zheng, Mingxin [1 ,2 ]
Li, You [3 ]
Deng, Xiaoling [1 ,2 ]
Zheng, Zheng [1 ,2 ]
机构：
[1] South China Agr Univ, State Key Lab Green Pesticide, Guangzhou, Guangdong, Peoples R China
[2] South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Con, Guangzhou, Peoples R China
[3] Fujian Agr & Forestry Univ, Vector Borne Virus Res Ctr, Fujian Prov Key Lab Plant Virol, Fuzhou, Fujian, Peoples R China
来源：
SCIENTIFIC DATA | 2024年 / 11卷 / 01期
基金：
中国国家自然科学基金;
关键词：
D O I：
10.1038/s41597-024-03855-3
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
"Candidatus Liberibacter asiaticus" (CLas) is a phloem-limited alpha-proteobacteria causing Citrus Huanglongbing, the destructive disease currently threatening global citrus industry. Genomic analyses of CLas provide insights into its evolution and biology. Here, we sequenced and assembled whole genomes of 135 CLas strains originally from 20 citrus cultivars collected at ten citrus-growing provinces in China. The resulting dataset comprised 135 CLas genomes ranging from 1,221,309 bp to 1,308,521 bp, with an average coverage of 675X. Prophage typing showed that 44 strains contained Type 1 prophage, 89 strains contained Type 2 prophage, 44 strains contained Type 3 prophage, and 34 of them contained more than one type of prophage/phage. The SNP calling identified a total of 5,090 SNPs. Genome-based phylogenetic analysis revealed two major clades among CLas strains, with Clade I dominated by CLas strains containing Type 1 prophage (79/95) and Clade II dominated by CLas strains containing Type 1 or Type 3 prophage (80/95). This CLas genome dataset provides valuable resources for studying genetic diversity and evolutionary pattern of CLas strains.
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页数：7
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