Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals MMP mediated expression patterns by distinct tumor microenvironment immune profiles in cervical cancer

被引:0
|
作者
Wang, He [1 ]
Li, Xinbo [1 ]
Zhou, Siyu [1 ]
Guo, Wendi [5 ]
Wang, Zhao [1 ]
Sun, Linlin [1 ]
Zhao, Zhongyi [1 ]
Han, Yanyan [3 ]
Zhang, Sanyuan [2 ]
Lv, Jieping [4 ]
Ping, Yi [1 ]
Wang, Zhe [2 ,3 ]
机构
[1] Shanxi Med Univ, Hosp 2, Dept Obstet & Gynecol, Taiyuan 030001, Peoples R China
[2] Shanxi Med Univ, Hosp 1, Dept Gynecol, Taiyuan 030001, Peoples R China
[3] Jiaocheng Cty Peoples Hosp, Dept Gynecol, 25 Tianning St, Luliang, Shanxi, Peoples R China
[4] Shanxi Med Univ, Hosp 1, Dept Anesthesiol, Taiyuan 030001, Peoples R China
[5] Nankai Univ, Sch Med, Tianjin 300071, Peoples R China
来源
JOURNAL OF CANCER | 2024年 / 15卷 / 16期
关键词
Matrix metalloproteinase; Cervical cancer; Tumor microenvironment; Extracellular matrix; Single-cell sequencing; Immunotherapy; MATRIX METALLOPROTEINASE-7; DIFFERENTIAL EXPRESSION; HUMAN-PAPILLOMAVIRUS; BREAST-CANCER; RISK-FACTORS; INVASION;
D O I
10.7150/jca.96429
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Few studies have analyzed the effect of matrix metalloproteinase (MMP) MMP ) expression patterns on the tumor microenvironment (TME) during development of cervical cancer (CC). Methods: We elucidated the landscape and score of MMP expression in CC using single-cell RNA sequencing (scRNA-seq) and RNA sequencing datasets. Further, we aimed the MMPscore to probe the infiltration of immune cells. Further, MMP expression was measured by quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). Results: We found MMPs were cell-type specific expressed in diverse types of CC cells, regulating the relative pathways of CC progression. Two distinct MMP expression patterns that associated infiltrated tumor microenvironment (TME) were identified. We discovered MMP expression patterns can predict the stage of tumor, subtype, stromal activity in the TME, genetic variation, and patient outcome. Patients with high MMPscore benefited from significantly better treatment and clinical outcomes. Conclusion: These results indicate high MMPscore in diverse cell types may regulate immune response and improve the survival of patients with CC, which assist in developing more effective immunization strategies.
引用
收藏
页码:5258 / 5276
页数:19
相关论文
共 50 条
  • [1] Integrated analysis of single-cell RNA-seq and bulk RNA-seq unveils heterogeneity and establishes a novel signature for prognosis and tumor immune microenvironment in ovarian cancer
    Wang, Zitao
    Zhang, Jie
    Dai, Fangfang
    Li, Bingshu
    Cheng, Yanxiang
    [J]. JOURNAL OF OVARIAN RESEARCH, 2023, 16 (01)
  • [2] Integrated analysis of single-cell RNA-seq and bulk RNA-seq unveils heterogeneity and establishes a novel signature for prognosis and tumor immune microenvironment in ovarian cancer
    Zitao Wang
    Jie Zhang
    Fangfang Dai
    Bingshu Li
    Yanxiang Cheng
    [J]. Journal of Ovarian Research, 16
  • [3] Integrative Analysis of Bulk RNA-Seq and Single-Cell RNA-Seq Unveils the Characteristics of the Immune Microenvironment and Prognosis Signature in Prostate Cancer
    Wang, Ruisong
    Xiao, Yaqian
    Pan, Meisen
    Chen, Zhongyuan
    Yang, Pinhong
    [J]. JOURNAL OF ONCOLOGY, 2022, 2022
  • [4] Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals distinct cancer-associated fibroblasts in head and neck squamous cell carcinoma
    Zhang, Qian
    Wang, Yuxin
    Xia, Chengwan
    Ding, Liang
    Pu, Yumei
    Hu, Xiaobei
    Cai, Huiming
    Hu, Qingang
    [J]. ANNALS OF TRANSLATIONAL MEDICINE, 2021, 9 (12)
  • [5] Comprehensive analysis of single-cell RNA-seq and bulk RNA-seq revealed the heterogeneity and convergence of the immune microenvironment in renal cell carcinoma
    Lv, Shihui
    Tao, Liping
    Liao, Hongbing
    Huang, Zhiming
    Lu, Yongyong
    [J]. FUNCTIONAL & INTEGRATIVE GENOMICS, 2023, 23 (02)
  • [6] Comprehensive analysis of single-cell RNA-seq and bulk RNA-seq revealed the heterogeneity and convergence of the immune microenvironment in renal cell carcinoma
    Shihui Lv
    Liping Tao
    Hongbing Liao
    Zhiming Huang
    Yongyong Lu
    [J]. Functional & Integrative Genomics, 2023, 23
  • [7] Single-cell RNA-Seq unveils tumor microenvironment
    Lee, Hae-Ock
    Park, Woong-Yang
    [J]. BMB REPORTS, 2017, 50 (06) : 283 - 284
  • [8] Integrated analysis of single-cell RNA-seq and bulk RNA-seq to unravel the molecular mechanisms underlying the immune microenvironment in the development of intestinal-type gastric cancer
    Su, Yongjian
    Zhang, Xiaoqing
    Liang, Youcheng
    Sun, Jianbo
    Lu, Chengyu
    Huang, Zunnan
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2024, 1870 (01):
  • [9] Integrated analysis of single-cell RNA-seq and bulk RNA-seq unravels the heterogeneity of cancer-associated fibroblasts in TNBC
    Wu, Xiaoqing
    Lu, Wenping
    Zhang, Weixuan
    Zhang, Dongni
    Mei, Heting
    Zhang, Mengfan
    Cui, Yongjia
    Zhuo, Zhili
    [J]. AGING-US, 2023, 15 (21): : 12674 - 12697
  • [10] Paper Integrated analysis of bulk RNA-seq and single-cell RNA-seq reveals the function of pyrocytosis in the pathogenesis of abdominal aortic aneurysm
    Zhao, Shiqi
    Cang, Hai
    Liu, Ying
    Huang, Yanjie
    Zhang, Song
    [J]. AGING-US, 2023, 15 (24): : 15287 - 15323