Parallel Brownian dynamics implementation of the Angular Averaged Ewald sums in Coulombic fluids

被引:0
|
作者
Guerrero-Garcia, Guillermo Ivan [1 ]
Enriquez-Capetillo, Gerardo Arturo Lindoro [2 ]
Cuevas-Tello, Juan C. [2 ]
Gonzalez-Tovar, Enrique [3 ]
机构
[1] Univ Autonoma San Luis Potosi, Fac Ciencias, Ave Chapultepec 1570, San Luis Potosi 78295, San Luis Potosi, Mexico
[2] Univ Autonoma San Luis Potosi, Fac Ingn, Alvaro Obregon 64, San Luis Potosi 78000, San Luis Potosi, Mexico
[3] Univ Autonoma San Luis Potosi, Inst Fis, Alvaro Obregon 64, San Luis Potosi 78000, San Luis Potosi, Mexico
关键词
MPI; Parallel computing; Electrical double layer; Macroions; Charged colloids; PARTICLE MESH EWALD; MONTE-CARLO; COMPUTER-SIMULATION; PRIMITIVE MODEL; CHARGE-DENSITY; SYSTEMS; ELECTROLYTES;
D O I
10.1016/j.molliq.2024.125620
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In nature, Coulombic fluids are present in many different forms, for instance, as aqueous electrolytes dissolving charged biomolecules (such as the DNA or lipid bilayers), macroion or nanoparticle solutions, molten salts, ionic liquids, plasmas, etc. One important characteristic of charged fluids is the long-range electrostatic interaction, which must be incorporated adequately in computer simulations in order to avoid artifacts. In this work, an MPI-Fortran 90 parallel implementation of Coulombic interactions using the Angular Averaged Ewald sums in Brownian dynamics is reported. This computational implementation is considerably faster than the corresponding serial version for a small to a sizable number of particles (tens of thousands). The accuracy of the parallelized Angular Averaged Ewald sums is compared regarding the Ewald sums method at the level of structural and electrostatic properties of a size- and valence-asymmetric electrolyte.
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