Development of RNA-Seq library preparation method for highly degraded FFPE RNA and ultra-low RNA input

被引:0
|
作者
Star, Ekaterina
Karim, Noreen
DeGroen, Berlin
Salgado, Michael
Wang, David
Li, Jing
Ilic, Katica
Beaudoin, Sarah
Vakulskas, Christopher
Min, Bosun
Chen, Peilin
机构
关键词
D O I
10.1158/1538-7445.AM2024-5781
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
5781
引用
收藏
页数:2
相关论文
共 50 条
  • [1] Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input
    Dimitra Sarantopoulou
    Soon Yew Tang
    Emanuela Ricciotti
    Nicholas F. Lahens
    Damien Lekkas
    Jonathan Schug
    Xiaofeng S. Guo
    Georgios K. Paschos
    Garret A. FitzGerald
    Allan I. Pack
    Gregory R. Grant
    Scientific Reports, 9
  • [2] A Highly Efficient, Low-Bias and Strand-Specific RNA-Seq Library Preparation Method for Low-Input Transcriptome Profiling
    Krishnan, K.
    Yigit, E.
    Karaca, M.
    Langhorst, B.
    Shtatland, T.
    Munafo, D.
    Rodriguez, D.
    Liu, P.
    Apone, L.
    Panchapakesa, V.
    Duggan, K.
    Sumner, C.
    Rozzi, C.
    Stewart, F. J.
    Mazzola, L.
    Bybee, J.
    Rivizzigno, D.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2016, 18 (06): : 1040 - 1040
  • [3] Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input
    Sarantopoulou, Dimitra
    Tang, Soon Yew
    Ricciotti, Emanuela
    Lahens, Nicholas F.
    Lekkas, Damien
    Schug, Jonathan
    Guo, Xiaofeng S.
    Paschos, Georgios K.
    FitzGerald, Garret A.
    Pack, Allan, I
    Grant, Gregory R.
    SCIENTIFIC REPORTS, 2019, 9
  • [4] A high-throughput method for Illumina RNA-Seq library preparation
    Kumar, Ravi
    Ichihashi, Yasunori
    Kimura, Seisuke
    Chitwood, Daniel H.
    Headland, Lauren R.
    Peng, Jie
    Maloof, Julin N.
    Sinha, Neelima R.
    FRONTIERS IN PLANT SCIENCE, 2012, 3
  • [5] Low-input transcriptomics library construction through EASY RNA-seq
    Zhou, Y.
    Xu, H.
    EUROPEAN JOURNAL OF IMMUNOLOGY, 2019, 49 : 2004 - 2005
  • [6] Application of Nextera™ technology to RNA-seq library preparation
    Fraz Syed
    Nature Methods, 2010, 7 (12) : 2 - 3
  • [7] The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing
    Cieslik, Marcin
    Chugh, Rashmi
    Wu, Yi-Mi
    Wu, Ming
    Brennan, Christine
    Lonigro, Robert
    Su, Fengyun
    Wang, Rui
    Siddiqui, Javed
    Mehra, Rohit
    Cao, Xuhong
    Lucas, David
    Chinnaiyan, Arul M.
    Robinson, Dan
    GENOME RESEARCH, 2015, 25 (09) : 1372 - 1381
  • [8] Systematic comparative analysis of strand-specific RNA-seq library preparation methods for low input samples
    Naphade, Swati
    Bhatnagar, Rajat
    Hanson-Smith, Victor
    Choi, Irene
    Zhang, Alice
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [9] Systematic comparative analysis of strand-specific RNA-seq library preparation methods for low input samples
    Swati Naphade
    Rajat Bhatnagar
    Victor Hanson-Smith
    Irene Choi
    Alice Zhang
    Scientific Reports, 12
  • [10] Bias in RNA-seq Library Preparation: Current Challenges and Solutions
    Shi, Huajuan
    Zhou, Ying
    Jia, Erteng
    Pan, Min
    Bai, Yunfei
    Ge, Qinyu
    BIOMED RESEARCH INTERNATIONAL, 2021, 2021