Bioinformatics and systems biology approaches to identify potential common pathogeneses for sarcopenia and osteoarthritis

被引:0
|
作者
Yang, Jinghong [1 ,2 ,3 ]
Zhong, Jun [1 ,2 ,3 ]
Du, Yimin [1 ,2 ,3 ]
Wang, Zi [1 ,2 ,3 ]
Jiang, Lujun [1 ,2 ,3 ]
Li, Zhong [1 ,2 ,3 ]
Liu, Yanshi [1 ,2 ]
机构
[1] Southwest Med Univ, Affiliated Hosp, Dept Orthoped, Luzhou, Peoples R China
[2] Southwest Med Univ, Sichuan Prov Lab Orthopaed Engn, Luzhou, Peoples R China
[3] Southwest Med Univ, Stem Cell Immun & Regenerat Key Lab Luzhou, Luzhou, Peoples R China
关键词
sarcopenia; osteoarthritis; hub genes; bioinformatics; pathogenesis; disease markers; KNEE OSTEOARTHRITIS; OLDER-ADULTS; DATABASE; MECHANISM; DISEASE; BURDEN;
D O I
10.3389/fmed.2024.1380210
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Sarcopenia, a geriatric syndrome characterized by progressive loss of muscle mass and strength, and osteoarthritis, a common degenerative joint disease, are both prevalent in elderly individuals. However, the relationship and molecular mechanisms underlying these two diseases have not been fully elucidated. In this study, we screened microarray data from the Gene Expression Omnibus to identify associations between sarcopenia and osteoarthritis. We employed multiple statistical methods and bioinformatics tools to analyze the shared DEGs (differentially expressed genes). Additionally, we identified 8 hub genes through functional enrichment analysis, protein-protein interaction analysis, transcription factor-gene interaction network analysis, and TF-miRNA coregulatory network analysis. We also discovered potential shared pathways between the two diseases, such as transcriptional misregulation in cancer, the FOXO signalling pathway, and endometrial cancer. Furthermore, based on common DEGs, we found that strophanthidin may be an optimal drug for treating sarcopenia and osteoarthritis, as indicated by the Drug Signatures database. Immune infiltration analysis was also performed on the sarcopenia and osteoarthritis datasets. Finally, receiver operating characteristic (ROC) curves were plotted to verify the reliability of our results. Our findings provide a theoretical foundation for future research on the potential common pathogenesis and molecular mechanisms of sarcopenia and osteoarthritis.
引用
收藏
页数:18
相关论文
共 50 条
  • [1] Bioinformatics and system biology approach to identify potential common pathogenesis for COVID-19 infection and sarcopenia
    Zhong, Jun
    Yuan, Hui
    Yang, Jinghong
    Du, Yimin
    Li, Zheng
    Liu, Xu
    Yang, Haibo
    Wang, Zhaojun
    Wang, Zi
    Jiang, Lujun
    Ren, Zhiqiang
    Li, Hongliang
    Li, Zhong
    Liu, Yanshi
    FRONTIERS IN MEDICINE, 2024, 11
  • [2] Bioinformatics and system biology approach to identify potential common pathogenesis for COVID-19 infection and osteoarthritis
    Ziyi Chen
    Wenjuan Wang
    Hao Jue
    Yinghui Hua
    Scientific Reports, 13
  • [3] Bioinformatics and system biology approach to identify potential common pathogenesis for COVID-19 infection and osteoarthritis
    Chen, Ziyi
    Wang, Wenjuan
    Jue, Hao
    Hua, Yinghui
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [4] Bioinformatics and Systems Biology Approach to Identify the Pathogenetic Link between Heart Failure and Sarcopenia
    Xu, Rui
    Ma, Ling-ling
    Cui, Shuai
    Chen, Ling
    Xu, Hong
    ARQUIVOS BRASILEIROS DE CARDIOLOGIA, 2023, 120 (10)
  • [5] Bioinformatics and systems biology approaches to identify the effects of COVID-19 on neurodegenerative diseases: A review
    Bu, Fan
    Guan, Ruiqian
    Wang, Wanyu
    Liu, Zhao
    Yin, Shijie
    Zhao, Yonghou
    Chai, Jianbo
    MEDICINE, 2022, 101 (49)
  • [6] Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
    Oany, Arafat Rahman
    Mia, Mamun
    Pervin, Tahmina
    Alyami, Salem Ali
    Moni, Mohammad Ali
    JOURNAL OF PERSONALIZED MEDICINE, 2021, 11 (05):
  • [7] Bioinformatics and Systems Biology Approaches to Identify the Synergistic Effects of Alcohol Use Disorder on the Progression of Neurological Diseases
    Alam, Md Jahangir
    Rahman, Md Habibur
    Hossain, Md Arju
    Hoque, Md Robiul
    Aktaruzzaman, Md
    NEUROSCIENCE, 2024, 543 : 65 - 82
  • [8] Comprehensive bioinformatics analysis and systems biology approaches to identify the interplay between COVID-19 and pericarditis
    Li, Daisong
    Chen, Ruolan
    Huang, Chao
    Zhang, Guoliang
    Li, Zhaoqing
    Xu, Xiaojian
    Wang, Banghui
    Li, Bing
    Chu, Xian-Ming
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [9] Bioinformatics and systems biology approaches to identify molecular targeting mechanism influenced by COVID-19 on heart failure
    Yang, Kezhen
    Liu, Jipeng
    Gong, Yu
    Li, Yinyin
    Liu, Qingguo
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [10] Systems biology approaches to identify potential targets and inhibitors of the intestinal microbiota to treat depression
    Teng, Fei
    Lu, Zhongwen
    Gao, Fei
    Liang, Jing
    Li, Jiawen
    Tian, Xuanhe
    Wang, Xianshuai
    Guan, Haowei
    Wang, Jin
    SCIENTIFIC REPORTS, 2023, 13 (01)