This study considers data from multiple sources for Gaussian graphical models with one target graph and several auxiliary graphs. We propose a method called joint estimation for multisource Gaussian graphical models (JEM-GGM) to achieve a stable and accurate estimate of the target graph. Using the information from the auxiliary graphs, the proposed method is used to effectively solve the problem of small sample sizes. In this method, equivalent regression models are developed for graphs and the difference between the auxiliary and target graphs was penalized to ensure computational efficiency and improve estimation accuracy. Simulations revealed that the proposed method always outperformed other methods in terms of estimation and prediction accuracy. The application of this method to breast and lymphatic cancer cell lines reveals that the proposed method always obtains a sparse collection of important genome pairs.
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Yale Univ, Program Computat Biol & Bioinformat, New Haven, CT USA
Stanford Univ, Dept Stat, Stanford, CA 94305 USAYale Univ, Program Computat Biol & Bioinformat, New Haven, CT USA
Lin, Zhixiang
Wang, Tao
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Shanghai Jiao Tong Univ, Dept Bioinformat & Biostat, Shanghai, Peoples R ChinaYale Univ, Program Computat Biol & Bioinformat, New Haven, CT USA
Wang, Tao
Yang, Can
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Hong Kong Baptist Univ, Dept Math, Kowloon Tong, Hong Kong, Peoples R ChinaYale Univ, Program Computat Biol & Bioinformat, New Haven, CT USA
Yang, Can
Zhao, Hongyu
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Yale Univ, Sch Publ Hlth, Dept Biostat, New Haven, CT 06520 USAYale Univ, Program Computat Biol & Bioinformat, New Haven, CT USA
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Edward Via Coll Osteopath Med, Dept Biomed Affairs & Res, Blacksburg, VA USAEdward Via Coll Osteopath Med, Dept Biomed Affairs & Res, Blacksburg, VA USA
Shan, Liang
Kim, Inyoung
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Virginia Polytech Inst & State Univ, Dept Phys, Blacksburg, VA 24061 USAEdward Via Coll Osteopath Med, Dept Biomed Affairs & Res, Blacksburg, VA USA
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Michigan State Univ, Dept Computat Math Sci & Engn, E Lansing, MI 48824 USAMichigan State Univ, Dept Computat Math Sci & Engn, E Lansing, MI 48824 USA
Xie, Yuying
Liu, Yufeng
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Univ N Carolina, Dept Stat & Operat Res, Chapel Hill, NC 27599 USAMichigan State Univ, Dept Computat Math Sci & Engn, E Lansing, MI 48824 USA
Liu, Yufeng
Valdar, William
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Univ N Carolina, Dept Genet, Chapel Hill, NC 27599 USAMichigan State Univ, Dept Computat Math Sci & Engn, E Lansing, MI 48824 USA