Deciphering the Key Loop: Enhancing <sc>l</sc>-Threonine Transaldolase's Catalytic Potential

被引:5
|
作者
Xi, Zhiwen [1 ,2 ]
Rao, Jingxin [2 ,3 ]
Zhang, Xinyi [1 ]
Liu, Zhiyong [1 ,2 ]
Zheng, Mingyue [3 ]
Li, Lihong [1 ,2 ]
Zhang, Wenchi [4 ]
Xu, Yan [1 ,2 ]
Zhang, Rongzhen [1 ,2 ]
机构
[1] Jiangnan Univ, Sch Biotechnol, Wuxi 214122, Peoples R China
[2] Jiangnan Univ, Key Lab Ind Biotechnol, Minist Educ, Wuxi 214122, Peoples R China
[3] Chinese Acad Sci, Shanghai Inst Mat Med, Drug Discovery & Design Ctr, State Key Lab Drug Res, 555 Zuchongzhi Rd, Shanghai 201203, Peoples R China
[4] Johns Hopkins Univ, Sch Med, Solomon H Snyder Dept Neurosci, Baltimore, MD 21205 USA
来源
ACS CATALYSIS | 2024年 / 14卷 / 14期
基金
美国国家科学基金会;
关键词
l-threonine transaldolase; beta-hydroxy-alpha-aminoacids; Loop engineering; computational analysis; byproduct elimination system; SERINE HYDROXYMETHYL TRANSFERASE; ALPHA-AMINO ACID; STREPTOCOCCUS-THERMOPHILUS; ENANTIOSELECTIVE SYNTHESIS; ASYMMETRIC-SYNTHESIS; DIRECTED EVOLUTION; ESCHERICHIA-COLI; ALDOLASE; SUBSTRATE; BINDING;
D O I
10.1021/acscatal.4c02049
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
l-Threonine transaldolase (LTTA) is an attractive biocatalyst because of its potential diastereoselectivity in the synthesis of beta-hydroxy-alpha-amino acids (beta HAAs). However, prospective development of LTTA has been hampered by its low activity. Here, a combination of techniques involving structural comparison, computational analysis, Loop deletion, and alanine scanning was used to identify a key Loop region (Loop 1) regulating the catalytic ability of Chitiniphilus shinanonensis LTTA (CsLTTA). Saturation mutagenesis and iterative saturation mutagenesis at the hot spots in Loop 1 were performed, and the best variant containing an F70T/C57Q/Y69T (TQT) triple mutation was screened. The diastereoisomer excess (de) produced by the TQT variant (95.4%(syn)) was greater than that produced by the wild-type (WT) enzyme (75.2%(syn) ), and the catalytic efficiency (k(cat)/K-m) of the TQT variant was four times higher than that of the wild-type enzyme. Molecular dynamics simulations, metadynamics simulations, and CAVER analysis revealed the critical role of the Loop 1 structure in regulating the hydrogen bond network and thus reshaping the active-site pocket to control the syn-tunnel direction. Further engineering of Loop 1 in ObiH, an LTTA responsible for obafluorin biosynthesis, resulted in the development of the F70T-C57Q-H69T (ObiH-TQT) variant producing a de of 97% syn . Using the ObiH-TQT variant for kilogram-scale synthesis of l-syn-p-methylsulfonylphenylserine, coupled with acetaldehyde elimination, resulted in space-time yields of up to 12.7 g L-1 h(-1). The method achieved 98.3% substrate conversion and 99.2% syn de within 6 h, marking the highest reported levels to date. The above findings will contribute to the industrial production of beta-hydroxy-alpha-amino acids, offer insights into the mechanism of Loop regions regulating the catalytic function of LTTAs, and provide ideas for engineering other enzymes.
引用
收藏
页码:10462 / 10474
页数:13
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