The Open Force Field Initiative: Open Software and Open Science for Molecular Modeling

被引:6
|
作者
Wang, Lily [1 ]
Behara, Pavan Kumar [2 ]
Thompson, Matthew W. [1 ]
Gokey, Trevor [3 ]
Wang, Yuanqing [4 ,5 ]
Wagner, Jeffrey R. [1 ]
Cole, Daniel J. [6 ]
Gilson, Michael K. [7 ]
Shirts, Michael R. [8 ]
Mobley, David L. [3 ,9 ]
机构
[1] Open Mol Software Fdn, Open Force Field, Davis, CA 95616 USA
[2] Univ Calif Irvine, Ctr Neurotherapeut, Irvine, CA 92697 USA
[3] Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
[4] Simons Ctr Computat Phys Chem, New York, NY 10004 USA
[5] Ctr Data Sci, New York, NY 10004 USA
[6] Newcastle Univ, Sch Nat & Environm Sci, Newcastle Upon Tyne NE1 7RU, England
[7] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA
[8] Univ Colorado, Dept Chem & Biol Engn, Boulder, CO 80305 USA
[9] Univ Calif Irvine, Dept Pharmaceut Sci, Irvine, CA 92697 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2024年 / 128卷 / 29期
关键词
FREE-ENERGY CALCULATIONS; BINDING FREE-ENERGIES; INTERMOLECULAR POTENTIAL FUNCTIONS; SOLVATION FREE-ENERGIES; ALKYL FUNCTIONAL-GROUP; SIDE-CHAIN; CONFORMATIONAL ENERGIES; CONFORMER GENERATION; FLUCTUATING CHARGE; BLIND PREDICTION;
D O I
10.1021/acs.jpcb.4c01558
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Force fields are a key component of physics-based molecular modeling, describing the energies and forces in a molecular system as a function of the positions of the atoms and molecules involved. Here, we provide a review and scientific status report on the work of the Open Force Field (OpenFF) Initiative, which focuses on the science, infrastructure and data required to build the next generation of biomolecular force fields. We introduce the OpenFF Initiative and the related OpenFF Consortium, describe its approach to force field development and software, and discuss accomplishments to date as well as future plans. OpenFF releases both software and data under open and permissive licensing agreements to enable rapid application, validation, extension, and modification of its force fields and software tools. We discuss lessons learned to date in this new approach to force field development. We also highlight ways that other force field researchers can get involved, as well as some recent successes of outside researchers taking advantage of OpenFF tools and data.
引用
收藏
页码:7043 / 7067
页数:25
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