DEVELOPMENT OF LECTIN GENE-BASED MARKERS ASSOCIATED WITH ANTICANCER BIOACTIVE COMPOUND IN RODENT TUBER MUTANT ( TYPHONIUM FLAGELLIFORME )

被引:0
|
作者
Sianipar, N. F. [1 ,2 ]
Muflikhati, Z. [3 ]
Reflinur, R. [4 ]
Rachman, F. [5 ]
Widyaningrum, D. [1 ]
Assidqi, K. [1 ,2 ]
机构
[1] Bina Nusantara Univ, Dept Biotechnol, Fac Engn, Jakarta, Indonesia
[2] Bina Nusantara Univ, Food Biotechnol Res Ctr, Jakarta, Indonesia
[3] Univ Padjadjaran, Grad Sch, Biotechnol Study Program, Bandung, Indonesia
[4] Natl Res & Innovat Agcy, Res Org Nat Sci & Environm, Res Ctr Appl Bot, Bogor, Indonesia
[5] Bogor Agr Univ, Plant Breeding & Biotechnol Grad Program, Bogor, Indonesia
来源
关键词
Rodent tuber ( Typhonium flagelliforme Lodd; lectin gene; anticancer bioactive compound; specific primer design; SNAP; allele-specific marker;
D O I
10.54910/sabrao2024.56.2.21
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Rodent tuber ( Typhonium flagelliforme Lodd.) has anticancer bioactive compounds, including betasitosterol, stigmasterol, octadecanoic, and hexadecenoic acids. Its mutant plants showed a higher cytotoxic effect on breast cancer cells than its wild -type plants. In rodent tuber mutants, the genebased molecular markers associated with anticancer compounds have not reached identification. Designing the primer pairs at SNP sites observed in rodent tuber mutant lectin genes led to the latest study developing SNAP molecular markers. The exon part region of previous lectin gene sequences at 500 bp long also underwent analysis. In such a sequence, a three-point mutation helped analyze the amino acid transformation. A successful design of a pair of primers based on non -synonymous SNP sites was specifically for SNP sites that cause variations in amino acids. A non -synonymous SNP at the base of 183 bp changes threonine to arginine. Lec183 distinguished rodent tuber mutant plants better from their wild type in the amplification. The Lec183 marker detected a lectin gene SNP's G allele and analyzed rodent tuber plants, which produced an amplification that determined the G allele level. The Lec183 is an effective marker for selecting rodent tuber-lectin mutation sites in large populations. This way helped obtain the rodent tubers with the highest anticancer bioactive compound more precisely and rapidly.
引用
收藏
页码:695 / 707
页数:13
相关论文
共 6 条
  • [1] Enhancement of the Contents of Anticancer Bioactive Compounds in Mutant Clones of Rodent Tuber (Typhonium flagelliforme Lodd.) based on GC-MS Analysis
    Sianipar, Nesti Fronika
    Purnamaningsih, Ragapadmi
    PERTANIKA JOURNAL OF TROPICAL AGRICULTURAL SCIENCE, 2018, 41 (01): : 305 - 320
  • [2] ANALYSIS OF GAMMA IRRADIATED FOURTH GENERATION MUTANT OF RODENT TUBER (TYPHONIUM FLAGELLIFORME LODD.) BASED ON MORPHOLOGY AND RAPD MARKERS
    Sianipar, Nesti Fronika
    Purnamaningsih, Ragapadmi
    Gumanti, Devie Lolita
    Rosaria
    Vidianty, Merry
    JURNAL TEKNOLOGI-SCIENCES & ENGINEERING, 2016, 78 (5-6): : 41 - 49
  • [3] Optimization design of tetra-primer ARMS-PCR using SNP lectin gene and in silico characterization of lectin protein in rodent tuber (Typhonium flagelliforme) mutant of Bogor accessions
    Sianipar, Nesti F.
    Muflikhati, Zidni
    Assidqi, Khoirunnisa
    NUSANTARA BIOSCIENCE, 2024, 16 (02) : 201 - 209
  • [4] EFFECT OF GAMMA IRRADIATION ON PROTEIN PROFILE OF RODENT TUBER (TYPHONIUM FLAGELLIFORME LODD.) IN VITRO MUTANT BASED ON 1D AND 2D PAGE ANALYSES
    Sianipar, Nesti Fronika
    Purnamaningsih, Ragapadmi
    Chelen
    JURNAL TEKNOLOGI, 2016, 78 (10-4): : 35 - 40
  • [5] Development of gene-based markers for use in construction of the chickpea (Cicer arietinum L.) genetic linkage map and identification of QTLs associated with seed weight and plant height
    Gupta, Shefali
    Kumar, Tapan
    Verma, Subodh
    Bharadwaj, Chellapilla
    Bhatia, Sabhyata
    MOLECULAR BIOLOGY REPORTS, 2015, 42 (11) : 1571 - 1580
  • [6] Development of gene-based markers for use in construction of the chickpea (Cicer arietinum L.) genetic linkage map and identification of QTLs associated with seed weight and plant height
    Shefali Gupta
    Tapan Kumar
    Subodh Verma
    Chellapilla Bharadwaj
    Sabhyata Bhatia
    Molecular Biology Reports, 2015, 42 : 1571 - 1580