Machine learning unveils immune-related signature in multicenter glioma studies

被引:0
|
作者
Yang, Sha [1 ]
Wang, Xiang [2 ]
Huan, Renzheng [3 ]
Deng, Mei [4 ]
Kong, Zhuo [4 ]
Xiong, Yunbiao [4 ]
Luo, Tao [4 ]
Jin, Zheng [4 ]
Liu, Jian [1 ,4 ]
Chu, Liangzhao [2 ]
Han, Guoqiang [4 ]
Zhang, Jiqin [5 ]
Tan, Ying [4 ]
机构
[1] Guizhou Univ, Med Coll, Guiyang 550025, Guizhou, Peoples R China
[2] Guizhou Med Univ, Affiliated Hosp, Dept Neurosurg, Guiyang 550004, Peoples R China
[3] Chongqing Med Univ, Affiliated Hosp 2, Dept Neurosurg, Chongqing 400010, Peoples R China
[4] Guizhou Prov Peoples Hosp, Dept Neurosurg, Guiyang, Peoples R China
[5] Guizhou Prov Peoples Hosp, Dept Anesthesiol, Guiyang, Peoples R China
基金
中国国家自然科学基金;
关键词
BRAIN-TUMORS; IMMUNOTHERAPY; HETEROGENEITY; GENES; GLIOBLASTOMA; PROGRESSION; LANDSCAPE; TRANSPORT; OUTCOMES;
D O I
10.1016/j.isci.2024.109317
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In glioma molecular subtyping, existing biomarkers are limited, prompting the development of new ones. We present a multicenter study -derived consensus immune -related and prognostic gene signature (CIPS) using an optimal risk score model and 101 algorithms. CIPS, an independent risk factor, showed stable and powerful predictive performance for overall and progression -free survival, surpassing traditional clinical variables. The risk score correlated significantly with the immune microenvironment, indicating potential sensitivity to immunotherapy. High -risk groups exhibited distinct chemotherapy drug sensitivity. Seven signature genes, including IGFBP2 and TNFRSF12A, were validated by qRT-PCR, with higher expression in tumors and prognostic relevance. TNFRSF12A, upregulated in GBM, demonstrated inhibitory effects on glioma cell proliferation, migration, and invasion. CIPS emerges as a robust tool for enhancing individual glioma patient outcomes, while IGFBP2 and TNFRSF12A pose as promising tumor markers and therapeutic targets.
引用
下载
收藏
页数:25
相关论文
共 50 条
  • [1] Development of an Immune-Related LncRNA Prognostic Signature for Glioma
    Cao, Yudong
    Zhu, Hecheng
    Tan, Jun
    Yin, Wen
    Zhou, Quanwei
    Xin, Zhaoqi
    Wu, Zhaoping
    Jiang, Zhipeng
    Guo, Youwei
    Kuang, Yirui
    Li, Can
    Zhao, Ming
    Jiang, Xingjun
    Peng, Jiahui
    Ren, Caiping
    FRONTIERS IN GENETICS, 2021, 12
  • [2] An Immune-Related lncRNA Signature to Predict Survival In Glioma Patients
    Pengfei Xia
    Qing Li
    Guanlin Wu
    Yimin Huang
    Cellular and Molecular Neurobiology, 2021, 41 : 365 - 375
  • [3] An Immune-Related lncRNA Signature to Predict Survival In Glioma Patients
    Xia, Pengfei
    Li, Qing
    Wu, Guanlin
    Huang, Yimin
    CELLULAR AND MOLECULAR NEUROBIOLOGY, 2021, 41 (02) : 365 - 375
  • [4] An immune-related gene signature for determining Ewing sarcoma prognosis based on machine learning
    Ren, En-hui
    Deng, Ya-jun
    Yuan, Wen-hua
    Wu, Zuo-long
    Zhang, Guang-zhi
    Xie, Qi-qi
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2021, 147 (01) : 153 - 165
  • [5] An immune-related gene signature for determining Ewing sarcoma prognosis based on machine learning
    En-hui Ren
    Ya-jun Deng
    Wen-hua Yuan
    Zuo-long Wu
    Guang-zhi Zhang
    Qi-qi Xie
    Journal of Cancer Research and Clinical Oncology, 2021, 147 : 153 - 165
  • [6] Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
    He, Jimin
    Zeng, Chun
    Long, Yong
    COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE, 2021, 2021
  • [7] Machine learning unveils an immune-related DNA methylation profile in germline DNA from breast cancer patients
    Lee, Ning Yuan
    Hum, Melissa
    Tan, Guek Peng
    Seah, Ai Choo
    Ong, Pei-Yi
    Kin, Patricia T.
    Lim, Chia Wei
    Samol, Jens
    Tan, Ngiap Chuan
    Law, Hai-Yang
    Tan, Min-Han
    Lee, Soo-Chin
    Ang, Peter
    Lee, Ann S. G.
    CLINICAL EPIGENETICS, 2024, 16 (01)
  • [8] Identification and Validation of a Prognostic Immune-Related Alternative Splicing Events Signature for Glioma
    Wang, Minjie
    Zhou, Zijie
    Zheng, Jianglin
    Xiao, Wenxuan
    Zhu, Jiameng
    Zhang, Chaocai
    Jiang, Xiaobing
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [9] RETRACTED ARTICLE: Construction and validation of a machine learning-based immune-related prognostic model for glioma
    Qi Mao
    Zhi Qiao
    Qiang Wang
    Wei Zhao
    Haitao Ju
    Journal of Cancer Research and Clinical Oncology, 150 (10)
  • [10] Retraction Note to: Construction and validation of a machine learning-based immune-related prognostic model for glioma
    Qi Mao
    Zhi Qiao
    Qiang Wang
    Wei Zhao
    Haitao Ju
    Journal of Cancer Research and Clinical Oncology, 151 (2)