The reference genome of Macropodus opercularis (the paradise fish)

被引:0
|
作者
Fodor, Erika [1 ]
Okendo, Javan [2 ]
Szabo, Nora [1 ]
Szabo, Kata [1 ]
Czimer, David [1 ]
Tarjan-Racz, Anita [1 ]
Szeverenyi, Ildiko [3 ]
Low, Bi Wei [4 ]
Liew, Jia Huan [4 ]
Koren, Sergey [5 ]
Rhie, Arang [5 ]
Orban, Laszlo [3 ]
Miklosi, Adam [6 ]
Varga, Mate [1 ]
Burgess, Shawn M. [2 ]
机构
[1] Eotvos Lorand Univ, Dept Genet, Budapest, Hungary
[2] Natl Human Genome Res Inst, Translat & Funct Genom Branch, Bethesda, MD 20892 USA
[3] Hungarian Univ Agr & Life Sci, Inst Aquaculture & Environm Safety, Dept Appl Fish Biol, Frontline Fish Genom Res Grp, Georgikon Campus, Keszthely, Hungary
[4] Lingnan Univ, Sci Unit, Hong Kong, Peoples R China
[5] Natl Human Genome Res Inst, Computat & Stat Genom Branch, Bethesda, MD USA
[6] Eotvos Lorand Univ, Dept Ethol, Budapest, Hungary
关键词
PERCIFORMES; SEQUENCE; LIFE;
D O I
10.1038/s41597-024-03277-1
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Amongst fishes, zebrafish (Danio rerio) has gained popularity as a model system over most other species and while their value as a model is well documented, their usefulness is limited in certain fields of research such as behavior. By embracing other, less conventional experimental organisms, opportunities arise to gain broader insights into evolution and development, as well as studying behavioral aspects not available in current popular model systems. The anabantoid paradise fish (Macropodus opercularis), an "air-breather" species has a highly complex behavioral repertoire and has been the subject of many ethological investigations but lacks genomic resources. Here we report the reference genome assembly of M. opercularis using long-read sequences at 150-fold coverage. The final assembly consisted of 483,077,705 base pairs (similar to 483 Mb) on 152 contigs. Within the assembled genome we identified and annotated 20,157 protein coding genes and assigned similar to 90% of them to orthogroups.
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页数:8
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