Data-driven public health security

被引:1
|
作者
Li, Cuiping [1 ,2 ]
Wu, Linhuan [3 ]
Shu, Chang [7 ]
Bao, Yiming [1 ,2 ,4 ,5 ]
Ma, Juncai [3 ,6 ]
Song, Shuhui [1 ,2 ,4 ,5 ]
机构
[1] Chinese Acad Sci, Beijing Inst Genom, Natl Genom Data Ctr, Beijing 100101, Peoples R China
[2] China Natl Ctr Bioinformat, Beijing 100101, Peoples R China
[3] Chinese Acad Sci, Inst Microbiol, Natl Microbiol Data Ctr, Beijing 100101, Peoples R China
[4] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[5] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China
[6] Chinese Acad Sci, Inst Microbiol, Microbial Resources & Big Data Ctr, Beijing 100101, Peoples R China
[7] Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, Beijing 100101, Peoples R China
来源
CHINESE SCIENCE BULLETIN-CHINESE | 2024年 / 69卷 / 09期
关键词
data; public health security; pathogenic microorganism; monitoring and tracking; pre-warning and prediction; THOUGHTS;
D O I
10.1360/TB-2023-0708
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Public health security incidents have emerged as one of the most pressing threats to human survival in the 21st century. This is particularly evident with the resurgence and re-emergence of infectious diseases, which pose a grave risk to global public health and socio-economic stability. In light of these challenges, the rapid development of big data analysis technology has paved the way for data-driven public health security, a crucial tool in our arsenal for infectious disease prevention, control, and informed decision-making. Data-driven public health security revolves around the collection, analysis, and utilization of extensive big data resources to prevent and control epidemics, which can significantly enhance our ability to safeguard public health. Among the various categories of public health security big data, genetic data stands out as a pivotal component. It provides valuable insights into microbial pathogen evolution and aids in the judgment of epidemic development from a molecular genetic evolutionary perspective. Research in this field strives to offer a scientific foundation for managing public health security by comprehensively analyzing large-scale genetic data, ultimately empowering us to respond more effectively to diverse public health challenges. Effective compliance management, intelligent analysis, and scientific application of pathogen genetic data are vital for constructing a robust framework for public health security. Firstly, in the context of current global outbreaks, pathogen genetic data has become a cornerstone for epidemic prevention and control. The urgent need to manage these data in compliance with standards is paramount. Secondly, intelligent analysis technologies play a pivotal role in extracting hidden information from pathogen genetic-related data, providing precise guidance for infectious disease prevention and control. Through the integration and analysis of pathogen genetic data, we can track pathogen evolution, predict new variants and transmission paths, issue timely warnings about transmission risks, and formulate effective prevention and control strategies. Finally, scientific application bridges the gap between theoretical knowledge and practical operations. Integrating pathogen genetic-related data with real-world scenarios allows us to develop more effective prevention and control measures, harness the potential of genetic data in public health security management, and elevate overall public health and security. This paper delves into the role of the China National Science Data Centers in the establishment of a comprehensive "storage-management-use" framework for genetic data in the realm of public health security. The objective is to enhance public awareness and understanding of genetic data-driven public health security. The China National Science Data Centers undertake the responsibility of collecting, integrating, and storing biomedical big data nationwide, facilitating big data mining applications. Their services encompass data exchange, integration and sharing, monitoring, and early warning platforms. These platforms ensure the timely, high-quality, and reliable availability of pathogenic microbial data and contribute to effective emergency responses, data usability improvement, spatiotemporal pathogenic genomic data tracking, and high-risk mutation and variant prediction using artificial intelligence. Taking inspiration from the experience of dealing with COVID-19, the databases and service platforms provided by the China National Genomics Data Center and China National Microbiology Data Center have played a pivotal role in real-time monitoring and the effective prevention and control of the pandemic. Furthermore, these resources serve as crucial technical reserves for addressing future emerging infectious public health crises. The development of these technologies and platforms has substantially bolstered China's capabilities in data-driven public health security, elevating its influence in global public health governance.
引用
收藏
页码:1156 / 1163
页数:8
相关论文
共 25 条
  • [1] The international nucleotide sequence database collaboration
    Arita, Masanori
    Karsch-Mizrachi, Ilene
    Cochrane, Guy
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D121 - D124
  • [2] Median-joining networks for inferring intraspecific phylogenies
    Bandelt, HJ
    Forster, P
    Röhl, A
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) : 37 - 48
  • [3] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [4] NCBI Viral Genomes Resource
    Brister, J. Rodney
    Ako-adjei, Danso
    Bao, Yiming
    Blinkova, Olga
    [J]. NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) : D571 - D577
  • [5] The European Nucleotide Archive in 2022
    Burgin, Josephine
    Ahamed, Alisha
    Cummins, Carla
    Devraj, Rajkumar
    Gueye, Khadim
    Gupta, Dipayan
    Gupta, Vikas
    Haseeb, Muhammad
    Ihsan, Maira
    Ivanov, Eugene
    Jayathilaka, Suran
    Kadhirvelu, Vishnukumar Balavenkataraman
    Kumar, Manish
    Lathi, Ankur
    Leinonen, Rasko
    Mansurova, Milena
    McKinnon, Jasmine
    O'Cathail, Colman
    Pauperio, Joana
    Pesant, Stephane
    Rahman, Nadim
    Rinck, Gabriele
    Selvakumar, Sandeep
    Suman, Swati
    Vijayaraja, Senthilnathan
    Waheed, Zahra
    Woollard, Peter
    Yuan, David
    Zyoud, Ahmad
    Burdett, Tony
    Cochrane, Guy
    [J]. NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) : D121 - D125
  • [6] The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types
    Chen, Tingting
    Chen, Xu
    Zhang, Sisi
    Zhu, Junwei
    Tang, Bixia
    Wang, Anke
    Dong, Lili
    Zhang, Zhewen
    Yu, Caixia
    Sun, Yanling
    Chi, Lianjiang
    Chen, Huanxin
    Zhai, Shuang
    Sun, Yubin
    Lan, Li
    Zhang, Xin
    Xiao, Jingfa
    Bao, Yiming
    Wang, Yanqing
    Zhang, Zhang
    Zhao, Wenming
    [J]. GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 19 (04) : 578 - 583
  • [7] One Health and human health
    Deng, Qiang
    Lu, Jiahai
    [J]. CHINESE SCIENCE BULLETIN-CHINESE, 2022, 67 (01): : 37 - 46
  • [8] Thoughts on the support of scientific data for major national strategic requirements
    Guo, Huadong
    Zou, Ziming
    Chen, Gang
    Zhou, Guomin
    Shi, Lei
    Hu, Xiaoyan
    [J]. CHINESE SCIENCE BULLETIN-CHINESE, 2024, 69 (09): : 1116 - 1122
  • [9] Nextstrain: real-time tracking of pathogen evolution
    Hadfield, James
    Megill, Colin
    Bell, Sidney M.
    Huddleston, John
    Potter, Barney
    Callender, Charlton
    Sagulenko, Pavel
    Bedford, Trevor
    Neher, Richard A.
    [J]. BIOINFORMATICS, 2018, 34 (23) : 4121 - 4123
  • [10] The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing
    Harrison, Peter W.
    Lopez, Rodrigo
    Rahman, Nadim
    Allen, Stefan Gutnick
    Aslam, Raheela
    Buso, Nicola
    Cummins, Carla
    Fathy, Yasmin
    Felix, Eloy
    Glont, Mihai
    Jayathilaka, Suran
    Kadam, Sandeep
    Kumar, Manish
    Lauer, Katharina B.
    Malhotra, Geetika
    Mosaku, Abayomi
    Edbali, Ossama
    Park, Young Mi
    Parton, Andrew
    Pearce, Matt
    Pena, Jose Francisco Estrada
    Rossetto, Joseph
    Russell, Craig
    Selvakumar, Sandeep
    Sitja, Xenia Perez
    Sokolov, Alexey
    Thorne, Ross
    Ventouratou, Marianna
    Walter, Peter
    Yordanova, Galabina
    Zadissa, Amonida
    Cochrane, Guy
    Blomberg, Niklas
    Apweiler, Rolf
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (W1) : W619 - W623