The complete chloroplast genome sequence and phylogenetic analysis of the Bichetii grass Chlorophytum laxum (Asparagaceae)

被引:0
|
作者
Li, Jingyu [1 ,2 ]
Cai, Shike [1 ,2 ]
Lee, Shiou Yih [3 ]
Hara, Yuka [3 ]
Wang, Jihua [1 ,2 ]
机构
[1] Guangdong Acad Agr Sci, Guangdong Prov Key Lab Crops Genet & Improvement G, Crop Res Inst, 18 Jinying West 2nd St,Wushan Rd, Guangzhou, Peoples R China
[2] Guangdong Prov Engn & Technol Res Ctr Conservat &, Guangzhou, Peoples R China
[3] INTI Int Univ, Fac Hlth & Life Sci, Nilai, Malaysia
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2024年 / 9卷 / 05期
关键词
Asparagales; genetic resources; next-generation sequencing; ornamental plant; phylogenomics; plastome;
D O I
10.1080/23802359.2024.2349134
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Chlorophytum laxum of Asparagaceae is a valuable ornamental plant native to the tropical regions of Asia, Africa, and Australia. The plant also has medicinal properties and is used as source for folk medicine. Despite being commercially important, genetic studies of C. laxum are still limited. To expand the genomic information of this plant species, we sequenced, assembled, and characterized its complete chloroplast genome. The chloroplast genome was 153,678 bp in length, with a large single-copy region (83,225 bp) and a small single-copy region (18,031 bp) separated by a pair of inverted repeat regions (26,211 bp each). A total of 127 genes were predicted, including 81 protein-coding, 38 tRNA, and eight rRNA genes. The overall GC content was 37.3%. Based on current sampling size, phylogenetic analysis using the maximum likelihood based on the complete chloroplast genome sequence revealed that the relationship in Chlorophytum is well resolved; C. laxum was closely related to C. rhizopendulum.
引用
收藏
页码:588 / 591
页数:4
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