End-to-end reproducible AI pipelines in radiology using the cloud

被引:0
|
作者
Bontempi, Dennis [1 ,2 ,3 ,4 ]
Nuernberg, Leonard [1 ,2 ,3 ,4 ]
Pai, Suraj [1 ,2 ,3 ,4 ]
Krishnaswamy, Deepa [5 ]
Thiriveedhi, Vamsi [5 ]
Hosny, Ahmed [1 ,4 ]
Mak, Raymond H. [1 ,4 ]
Farahani, Keyvan [6 ]
Kikinis, Ron [5 ]
Fedorov, Andrey [5 ]
Aerts, Hugo J. W. L. [1 ,2 ,3 ,4 ]
机构
[1] Harvard Med Sch, Artificial Intelligence Med AIM Program, Mass Gen Brigham, Boston, MA 02115 USA
[2] Maastricht Univ, Radiol & Nucl Med, CARIM, Maastricht, Netherlands
[3] Maastricht Univ, GROW, Maastricht, Netherlands
[4] Harvard Med Sch, Dana Farber Canc Inst, Dept Radiat Oncol, Boston, MA 02115 USA
[5] Harvard Med Sch, Brigham & Womens Hosp, Dept Radiol, Boston, MA USA
[6] NHLBI, NIH, Bethesda, MD USA
基金
欧盟地平线“2020”; 欧洲研究理事会;
关键词
ARTIFICIAL-INTELLIGENCE; HEALTH; INFORMATION;
D O I
10.1038/s41467-024-51202-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Artificial intelligence (AI) algorithms hold the potential to revolutionize radiology. However, a significant portion of the published literature lacks transparency and reproducibility, which hampers sustained progress toward clinical translation. Although several reporting guidelines have been proposed, identifying practical means to address these issues remains challenging. Here, we show the potential of cloud-based infrastructure for implementing and sharing transparent and reproducible AI-based radiology pipelines. We demonstrate end-to-end reproducibility from retrieving cloud-hosted data, through data pre-processing, deep learning inference, and post-processing, to the analysis and reporting of the final results. We successfully implement two distinct use cases, starting from recent literature on AI-based biomarkers for cancer imaging. Using cloud-hosted data and computing, we confirm the findings of these studies and extend the validation to previously unseen data for one of the use cases. Furthermore, we provide the community with transparent and easy-to-extend examples of pipelines impactful for the broader oncology field. Our approach demonstrates the potential of cloud resources for implementing, sharing, and using reproducible and transparent AI pipelines, which can accelerate the translation into clinical solutions. A significant portion of the scientific literature on AI for radiology lacks transparency and reproducibility, which hampers sustained progress toward clinical translation. Here, the authors offer a blueprint for transparent AI pipelines on cloud platforms, focusing on lung cancer prediction and biomarker discovery.
引用
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页数:9
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