The influence of KaiA mutations on its function in the KaiABC circadian clock system

被引:1
|
作者
Chen, Qiang [1 ]
Liu, Sen [1 ,2 ,3 ]
Yang, Liting [1 ]
Zhang, Lingya [1 ]
Li, Jinkui [1 ]
机构
[1] China Three Gorges Univ, Med Coll, Hubei Key Lab Tumor Microenvironm & Immunotherapy, Yichang 443002, Peoples R China
[2] Hubei Univ Technol, Natl Ctr Cellular Regulat &Mol Pharmaceut 111, Wuhan 430068, Hubei, Peoples R China
[3] Hubei Univ Technol, Inst Biol & Pharmaceut Sci, Wuhan 430068, Hubei, Peoples R China
来源
DATA IN BRIEF | 2018年 / 18卷
基金
中国国家自然科学基金;
关键词
KaiA; Circadian clock; Protein structure and function; Domain-swapping; Function switching;
D O I
10.1016/j.dib.2018.03.032
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The core oscillator of the circadian clock of cyanobacteria consists of three proteins, KaiA, KaiB, and KaiC. The KaiABC oscillator can be re-constituted in vitro with the purified proteins in buffer containing ATP and Mg2+. The interaction between KaiA and KaiC has not been well studied. In this article, different KaiA mutants were designed and used to elucidate the influence of KaiA structure on its function in the in vitro system. Molecular dynamics simulations were adopted to study the structural flexibility of KaiA homodimer. The data presented in this article provide further experimental supports to our work in Chen et al. (2017) [1]. (C) 2018 The Authors. Published by Elsevier Inc.
引用
收藏
页码:241 / 247
页数:7
相关论文
共 50 条
  • [1] A Dynamic KaiA-KaiC Interaction Maintains the Oscillation of the KaiABC Circadian Clock
    Liu, Sen
    Chen, Qiang
    [J]. PROTEIN SCIENCE, 2017, 26 : 158 - 158
  • [2] Loop-Loop Interactions Regulate KaiA-Stimulated KaiC Phosphorylation in the Cyanobacterial KaiABC Circadian Clock
    Egli, Martin
    Pattanayek, Rekha
    Sheehan, Jonathan H.
    Xu, Yao
    Mori, Tetsuya
    Smith, Jarrod A.
    Johnson, Carl H.
    [J]. BIOCHEMISTRY, 2013, 52 (07) : 1208 - 1220
  • [3] The reversible function switching of the circadian clock protein KaiA is encoded in its structure
    Chen, Qiang
    Liu, Sen
    Yang, Liting
    Zhang, Lingya
    Li, Jinkui
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2017, 1861 (11): : 2535 - 2542
  • [4] ATP hydrolysis by KaiC promotes its KaiA binding in the cyanobacterial circadian clock system
    Yunoki, Yasuhiro
    Ishii, Kentaro
    Yagi-Utsumi, Maho
    Murakami, Reiko
    Uchiyama, Susumu
    Yagi, Hirokazu
    Kato, Koichi
    [J]. LIFE SCIENCE ALLIANCE, 2019, 2 (03)
  • [5] Circadian oscillations of KaiA-KaiC and KaiB-KaiC complex formations in an in vitro reconstituted KaiABC clock oscillator
    Murakami, Reiko
    Mutoh, Risa
    Ishii, Ketaro
    Ishiura, Masahiro
    [J]. GENES TO CELLS, 2016, 21 (08) : 890 - 900
  • [6] Comparative analysis of the cyanobacterial circadian clock genes kaiABC
    Onai, Kiyoshi
    Morishita, Megumi
    Ishiura, Masahiro
    [J]. GENES & GENETIC SYSTEMS, 2007, 82 (06) : 555 - 555
  • [7] Structure and function from the circadian clock protein KaiA of Synechococcus elongatus:: A potential clock input mechanism
    Williams, SB
    Vakonakis, I
    Golden, SS
    LiWang, AC
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (24) : 15357 - 15362
  • [8] Protein-Protein Interactions in the Cyanobacterial KaiABC Circadian Clock
    Egli, Martin
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2005, 61 : C28 - C28
  • [9] Analysis of the Residue Variation of the Circadian Clock Protein KaiA
    Liu, Sen
    Chen, Weiqun
    [J]. 2012 7TH INTERNATIONAL CONFERENCE ON COMPUTING AND CONVERGENCE TECHNOLOGY (ICCCT2012), 2012, : 1374 - 1377
  • [10] Protein-protein interactions in the cyanobacterial KaiABC circadian clock
    Egli, Martin
    Pattanayek, Rekha
    Pattanayek, Sabuj
    [J]. MODELS, MYSTERIES AND MAGIC OF MOLECULES, 2008, : 283 - +