The Soviet resonance controversy was a chemical counterpart to Lysenkoism in which Soviet ideologues charged that Linus Pauling's resonance concept was hostile to Marxism. We study it here to illustrate the role of social factors in science-faith dialogue. Because Soviet chemists were attentive to ideological dimensions of the controversy, they were not only willing to engage in public dialogue but also offered a response that decoupled the scientific aspects of resonance from ideological hostility, largely by modifying how they talked about delocalized chemical bonds. This enabled them to criticize and reject a pseudoscientific alternative to resonance and to avoid a Lysenko-like takeover of theoretical chemistry without threatening the wider Soviet social system. A potential lesson is that Christians in science who wish to promote fellow believers' acceptance of their work would do well to account for the role of ideology in religiously motivated antimainstream science efforts.